Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1) AT4G33380 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139600 [exp] 572 / 0 AT4G17070 405 / 3e-142 peptidyl-prolyl cis-trans isomerases (.1) Potri.003G083900 [exp] 468 / 1e-166 AT4G17070 484 / 3e-173 peptidyl-prolyl cis-trans isomerases (.1) Potri.001G150300 [exp] 462 / 2e-164 AT4G17070 475 / 1e-169 peptidyl-prolyl cis-trans isomerases (.1) Potri.002G127700 [exp] 43 / 0.0002 AT4G33380 300 / 8e-101 unknown protein Potri.014G031900 [exp] 42 / 0.0004 AT4G33380 331 / 3e-113 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037182 [exp] 308 / 6e-105 AT4G17070 306 / 3e-104 peptidyl-prolyl cis-trans isomerases (.1) Lus10036745 [exp] 299 / 4e-102 AT4G17070 298 / 6e-102 peptidyl-prolyl cis-trans isomerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.014G051300.1 pacid=42762921 polypeptide=Potri.014G051300.1.p locus=Potri.014G051300 ID=Potri.014G051300.1.v4.1 annot-version=v4.1 ATGGGTCGCAAGCAAACCGTTCCAGAACTCGGTCGTTATGGACTTCTGGCTCTTTTCGTTATGGGTACAATCTCCTGTTGCATGGTCTACCTTTGTTTCT CTGCATTGTTTAGACCACCTAATAGTAATACAGAGTTTGTGGTTTCAAAAGTTAGTGATGGTTTGAAGAGCGAAGATGCAGATGGGGATTGTTGTAGAGG GATTGAGCATTTGGAGCTATGGGGTGACGCTGTCAAATGGGGTTCTGAATTTAAAGTCAATTCTTCTAAAGCTTGTTGCTTGGCTTGTAAAGGAATGTGT AGCGGTGACAGTGGGCCTTGTTTGTGTGATTCTTGGGTGTTTTGTGGAGATAAACAGGCTTGTGGTGATAAATTTGGCGAGTGTTGGCTGAAGAAACAGA AGGACACCTTGGAGCCTGATCGGCTAGACTCAGGGGACCATGTTATGTGGACTTCTGGAATTGTTTTTGGGAGAGGAGAGGGCATCATTGGATTGGAAAC GGAATATGGGACACTTCATCTAAAACTGTTACCTGGTTGTGCTCCACATTCTATTTCATACATTCTTGATTTGTTGGTTTCGCACCATTGTGTGGGTTGC CACTTTTACCGTGCTGAAAGCCGGGGAAAGTCGTGGGATTCAGAAGGAAATCATATTGAACAGGCTCCATATGGCCCCCCGTTTGCACTAATTCAAGGAA CTCTTGGAGCCTCCGGAACAATTTTTGAGGATATTCCAACAGAGGCTTGCCCTACAATTAGAAGAGGTTCGGTGGCATGGGTTGAGTCTGGCCCAGAATT CTTCATCAGCCTAGCCAATCACAATGAGTGGAGTAAGGCATATACGGTGTTTGGTTTCGTTCTTCCTGAAGATATGGAAATTGTAGAGAGAATTGCACAG CTTCCAACCAAACCAGAGGTGTGGGGTAATATTAATGTTGCTGTCTTGGAAAATCCTGTTCCGTTACATGTCCGAAGAATCAAGAGAAGTGCCGGAAACC AAAAGCTTTACACAAACTGA
AA sequence Show only first row Show all	>Potri.014G051300.1 pacid=42762921 polypeptide=Potri.014G051300.1.p locus=Potri.014G051300 ID=Potri.014G051300.1.v4.1 annot-version=v4.1 MGRKQTVPELGRYGLLALFVMGTISCCMVYLCFSALFRPPNSNTEFVVSKVSDGLKSEDADGDCCRGIEHLELWGDAVKWGSEFKVNSSKACCLACKGMC SGDSGPCLCDSWVFCGDKQACGDKFGECWLKKQKDTLEPDRLDSGDHVMWTSGIVFGRGEGIIGLETEYGTLHLKLLPGCAPHSISYILDLLVSHHCVGC HFYRAESRGKSWDSEGNHIEQAPYGPPFALIQGTLGASGTIFEDIPTEACPTIRRGSVAWVESGPEFFISLANHNEWSKAYTVFGFVLPEDMEIVERIAQ LPTKPEVWGNINVAVLENPVPLHVRRIKRSAGNQKLYTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.014G051300 [exp]	0	1
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	2.23	0.9393
AT3G04310			unknown protein		Potri.010G063300 [exp]	4.24	0.9557
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	4.35	0.9601
AT3G23760			unknown protein		Potri.018G096056 [exp]	5.29	0.9412
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	8.12	0.9274
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Potri.012G038200 [exp]	10.48	0.9211
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	11.48	0.9418
AT1G64355			unknown protein		Potri.003G138500 [exp]	15.16	0.9211
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	16.43	0.9367
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	24.16	0.9006

Compare expression of checked genes

Potri.014G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.