Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 629 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 129 / 2e-31 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 116 / 2e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 79 / 3e-15 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 79 / 4e-15 flowering time control protein-related / FCA gamma-related (.1) AT3G16380 78 / 1e-14 PAB6 poly(A) binding protein 6 (.1) AT3G13224 73 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G71770 72 / 1e-12 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G49760 71 / 2e-12 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT5G06210 62 / 4e-11 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G139700 [exp] 880 / 0 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G116400 [exp] 366 / 2e-114 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 360 / 5e-112 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 148 / 5e-38 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 145 / 5e-37 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 133 / 9e-33 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 129 / 2e-31 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 125 / 3e-30 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 124 / 8e-30 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028162 [exp] 723 / 0 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 328 / 5e-101 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 322 / 5e-96 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021351 [exp] 136 / 8e-34 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 127 / 4e-31 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 127 / 8e-31 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 123 / 2e-29 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 121 / 6e-29 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 90 / 8e-19 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029574 [exp] 88 / 1e-17 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.014G051500.1 pacid=42763912 polypeptide=Potri.014G051500.1.p locus=Potri.014G051500 ID=Potri.014G051500.1.v4.1 annot-version=v4.1 ATGCCTCCACGAACGTTGAAGAGAGGAGCGGCAGCGGCTGCGAAGAAAAGAACGGTGAGGAAGGTGCAGAATCAGCAACAGCCAGAAACGGCGGAGGAGG CGTTGAATTTGGAGGAGAAACAGACGGTGGTTGACGAGAAACCTGTGGCTATGGAGGAGGAGGAGATTGTGGTTGTTGAAGACAAATTATTTACTGAAGA GAAGAAAGATGGAGAAGATGAAATTGAAGCTGATGTGGACGCGAATGGATCAGCTTCTTTGAAAAAAGAGGACGGGGTCAAGGAGCCTGTAGACGAGTAT GAAAAAGATGAGAGGTTAGATTTTGATGATAATGAACCGGAATATGAACATGAAGAATATGGCGGGGTGGATTATGATGATAAGGAAATTGAACAAGAGG ATGTTCAGGAGGTGGAAGATGAATTTGAGGAAGAACATGAGGAGAATGCTGGTGAAGAGGAAGAGGGTAATTTAGTTGAGGAGGAATTGGAAGAGGTTCC TGAAGAACTTGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAAGTTGAACGTGCTGAGATGGCTGACGTGGAGGAAGAGGATGAGCACCATGAGGTG TTTAAGGAGAGACGCAAGCGGAAGGAGTTTGAAATATTTGTTGGTGGTTTAGACAAGGATGCTACTGAGGATGATCTTCGGAAAGTATTCAGCCGTGTTG GTGAGGTTACCGAAGCCAGGCTAATGATGAACCCCCAGACTAAGAAAAACAAAGGGTTTGCATTCTTGCGTTTTGCAACTGTCGAGCAAGCAAAACGAGC TGTGACAGAGCTCAAAAACCCAGTGATCAATGGGAAACAATGTGGTGTTACTCCAAGTCAAGACAGTGACACCCTTTTTCTGGGTAACATTTGCAAGACA TGGACAAAGGAAGCTTTGAAAGAGAAATTGAAACACTATGGAGTTGAGAATGTTGAGGATTTGACCCTGGTAGAAGATAGTAACAACTTGGGAATGAATC GGGGGTTTGCGTTTCTGGAATTTTCTTCTCGGTCAGATGCTATGAATGCTTTTAAGCGTCTTCAGAAGAGAGATGTTTTATTTGGAGTGGATAGGCCTGC AAAGGTATCTTTTGCAGATTCCTTCATTGGTCCTGGTGATGAAATCATGGCACAGGTGAAGACTCTGTTTATTGATGGCCTGCCTGCATCATGGGACGAG GATCGTTTTCGGGTGCTTTTGAAGAAATACGGGAACATAGAAAAGATTGAGCTTGCACGGAATATGCCATCTGCCAGGAGAAAGGATTTTGGTTTTGTTA CCTTTGACACTCATGATGCTGCAGTGGCATGTGCTAAAAGCATCAACAATGTAGAGTTGGGTGAGGGAGACAACAAGGTTAAAGTTAGGGCCCGCTTATC AAGACCCCTCCAAAGGGGAAAAGGAAAACATGCAAGTCGTGGTGATTTCCAATCTGGGCATGGAGCTAGTAGAGTTGTCAGGGGTCCATGGGTTCGTCCT CTGCAGCATAGCTACTCTACTCGTGCTCCCCCAGTCAGAGGAATTGCAACTCGTGCTCCCCCAGTCAGTCTAAAGAGGTCTCCAGGATTGAGAGAGAGAC GTCCTCCTGTGATGTCCATGCCAGCAAGAAGCAGGCCTCTGGCTCCTCATTCTAGGTCCTATGACAGGAGACCACCTCCTCCATCTTACCCAAAGGGTAG CTTCAAAAGGGAATATGTTCGGCATGAGGAGCTTCCTTCTCCAAGGAGCAGACCTGCTGTAGATTATGGTCCCAGGTCTGTTCCAGAAAGACGGCCATCC TATAGAGAGGACTACTCTTCTCGTGGTACCAGCTATTCTGATCTTCCCAGAAGTACATCTCGCACATCTGCAAGGAGAGCTTATGCTGATGATGGCTATA ATCAAAGGTATGAGAGGCCTCCTCCAAGTTACCATGAAGGGCGTTCCCGTGATTATGATTCTGTTGCTGGATCAAAACGTCCATATTCAGCAATTGATGA TATTCCTCCCCGTTATGCTGATGCCGGTGCTCGCCATTCGAGGCCTCGTTTGGATTATGAACTTGGTTCCAGAGCTTCTCAATATGGGGATGCATATAGT GATAGACTTGGGAGATCTGCTGTAGGATATGGGGGCAGCAGAAATTCTATTTCCAGTCAGGATTCACATGGGATGTATAGTAGCCGTCAGGGTATGGGTT ATGGAGGTTCTTATGGAGGCAGTGATGGTGGAATGTACCAATCAAGCTACAGTGGTGATTACATGTCTCGCGGCGGTGATGTTGGTGGTAGCTCTTACTC GTCAATGTACTCAAGTCGTGGCATGGGCAGCAGCAACTACATGGGTACTGGTAGCTCAGGATCATATTATTAA
AA sequence Show only first row Show all	>Potri.014G051500.1 pacid=42763912 polypeptide=Potri.014G051500.1.p locus=Potri.014G051500 ID=Potri.014G051500.1.v4.1 annot-version=v4.1 MPPRTLKRGAAAAAKKRTVRKVQNQQQPETAEEALNLEEKQTVVDEKPVAMEEEEIVVVEDKLFTEEKKDGEDEIEADVDANGSASLKKEDGVKEPVDEY EKDERLDFDDNEPEYEHEEYGGVDYDDKEIEQEDVQEVEDEFEEEHEENAGEEEEGNLVEEELEEVPEELEGEEDDEHAGEEVERAEMADVEEEDEHHEV FKERRKRKEFEIFVGGLDKDATEDDLRKVFSRVGEVTEARLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT WTKEALKEKLKHYGVENVEDLTLVEDSNNLGMNRGFAFLEFSSRSDAMNAFKRLQKRDVLFGVDRPAKVSFADSFIGPGDEIMAQVKTLFIDGLPASWDE DRFRVLLKKYGNIEKIELARNMPSARRKDFGFVTFDTHDAAVACAKSINNVELGEGDNKVKVRARLSRPLQRGKGKHASRGDFQSGHGASRVVRGPWVRP LQHSYSTRAPPVRGIATRAPPVSLKRSPGLRERRPPVMSMPARSRPLAPHSRSYDRRPPPPSYPKGSFKREYVRHEELPSPRSRPAVDYGPRSVPERRPS YREDYSSRGTSYSDLPRSTSRTSARRAYADDGYNQRYERPPPSYHEGRSRDYDSVAGSKRPYSAIDDIPPRYADAGARHSRPRLDYELGSRASQYGDAYS DRLGRSAVGYGGSRNSISSQDSHGMYSSRQGMGYGGSYGGSDGGMYQSSYSGDYMSRGGDVGGSSYSSMYSSRGMGSSNYMGTGSSGSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	4.58	0.8121
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	5.47	0.8275
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	10.09	0.8240
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.008G048000 [exp]	10.39	0.7890
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.007G014100 [exp]	12.32	0.8002
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	13.85	0.7789
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	14.28	0.7125
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	14.42	0.7523
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	17.17	0.7907
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	20.14	0.7848

Compare expression of checked genes

Potri.014G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.