Plant FIBer expression Database

Pt-CKB3.1 (Potri.014G052100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CKB3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44680 422 / 3e-150 CKB4 casein kinase II beta subunit 4 (.1.2)
AT5G47080 408 / 1e-144 CKB1 casein kinase II beta chain 1 (.1.2.3.4)
AT4G17640 394 / 4e-139 CKB2 casein kinase II beta chain 2 (.1.2)
AT3G60250 388 / 7e-137 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G139900
[exp]
511 / 0 AT2G44680 419 / 8e-149 casein kinase II beta subunit 4 (.1.2)
Potri.001G149600
[exp]
384 / 4e-135 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4)
Potri.003G084900
[exp]
365 / 1e-127 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028161
[exp]
459 / 1e-164 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2)
Lus10028160
[exp]
456 / 1e-163 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2)
Lus10042861
[exp]
453 / 4e-162 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2)
Lus10042859
[exp]
443 / 2e-158 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2)
Lus10028159
[exp]
442 / 3e-158 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2)
Lus10042860
[exp]
387 / 2e-137 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01214 CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence
>Potri.014G052100.4 pacid=42762910 polypeptide=Potri.014G052100.4.p locus=Potri.014G052100 ID=Potri.014G052100.4.v4.1 annot-version=v4.1
ATGTACAAAGATCGAGGTGGGTTTGGTGGCGGGTCATCAAGATCGGAGATTGTTGGAGGACCGCTTGATCGAAAGCGTATAAATGATGCGCTAGACAAGC
ATCTAGAGAAGTCTTCTCCTTCAACTTCGAGAGGATTGAATAATAGTAGTAAGGATAAAGAAAGATTGTCTGTTCCTTCTACTTCCACTGGTAAATCATC
ACAGCATCAGCAGCATCTTGAACATCATCGTGCTGATTCCCGCTCTGCTTCGCTATCCAAAAACAAATGCTCTGATGAGGAATCTGAGACAGACAGTGAG
GAGTCTGATGTTAGTGGTTCTGATGGAGATGATACATCTTGGATCTCATGGTTTTGCAATTTGCGTGGAAATGAATTTTTCTGTGAAGTTGATGACGAGT
ACATTCAGGATGATTTTAATCTTTGTGGATTGAGCAGTCAAGTTCCATACTATGATTATGCACTTGATCTTATATTGGATGTTGAATCTTCTCATGGTGA
TATGTTCACCGAAGAACAGAATGAGTTGGTGGAATCCGCAGCAGAGATGCTCTACGGTCTTATTCATGTGCGTTACATACTTACTAGCAAGGGGATGTCT
GCAATGTTGGAGAAGTACAAAAACTATGACTTTGGGAGATGCCCACGAGTTTATTGCTGTGGACAGCCCTGCCTTCCAGTTGGTCAATCAGACATTCCTC
GTTCTAGTACTGTCAAAATCTACTGTCCAAAATGTGAAGACATCTATTACCCTCGATCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACCAC
ATTCCCTCACCTATTTTTGATGACATATGGACACCTAAAGCCACAGAAAGCAATACAGAGCTACGTTCCAAGAGTTTTTGGCTTCAAACTCCACAAGCCT
TGA
AA sequence
>Potri.014G052100.4 pacid=42762910 polypeptide=Potri.014G052100.4.p locus=Potri.014G052100 ID=Potri.014G052100.4.v4.1 annot-version=v4.1
MYKDRGGFGGGSSRSEIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSSQHQQHLEHHRADSRSASLSKNKCSDEESETDSE
ESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMS
AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKAIQSYVPRVFGFKLHKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44680 CKB4 casein kinase II beta subunit... Potri.014G052100
[exp]
0 1 Pt-CKB3.1
AT1G16560 Per1-like family protein (.1.2... Potri.007G065800
[exp]
7.34 0.8904
AT5G60640 ATPDI2, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Potri.009G013600
[exp]
7.74 0.8849
AT3G02350 GAUT9 galacturonosyltransferase 9 (.... Potri.017G106800
[exp]
7.81 0.8929
AT5G42570 B-cell receptor-associated 31-... Potri.011G007200
[exp]
17.49 0.8789
AT2G18040 PIN1AT "peptidylprolyl cis/trans isom... Potri.007G013400
[exp]
18.97 0.8543
AT4G34450 coatomer gamma-2 subunit, puta... Potri.004G153500
[exp]
21.63 0.8845
AT1G09630 ATRAB-A2A, ATRA... ARABIDOPSIS RAB GTPASE A2A, RA... Potri.004G226400
[exp]
22.13 0.8674
AT2G26260 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydroge... Potri.006G218400
[exp]
22.97 0.8706
AT1G22840 CYTC-1, ATCYTC-... CYTOCHROME C-A, CYTOCHROME C-1... Potri.019G076101
[exp]
25.23 0.8509
AT1G13730 Nuclear transport factor 2 (NT... Potri.010G157800
[exp]
26.17 0.8831

Potri.014G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.