Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17080 349 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 327 / 3e-107 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21920 263 / 4e-83 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 244 / 7e-76 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G60890 90 / 1e-18 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G21980 88 / 3e-18 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G41210 87 / 9e-18 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 86 / 2e-17 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 85 / 2e-17 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 85 / 3e-17 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140000 [exp] 585 / 0 AT4G17080 373 / 1e-124 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 375 / 3e-125 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 356 / 9e-118 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 256 / 2e-80 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G175800 [exp] 256 / 2e-80 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.016G036800 [exp] 91 / 5e-19 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.005G172800 [exp] 88 / 3e-18 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 88 / 3e-18 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 86 / 2e-17 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028158 [exp] 430 / 2e-146 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 370 / 1e-123 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028062 [exp] 259 / 4e-81 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 248 / 5e-77 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10018200 [exp] 94 / 6e-20 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 94 / 7e-20 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 92 / 1e-19 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10001377 [exp] 85 / 3e-17 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10015456 [exp] 85 / 4e-17 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10027306 [exp] 82 / 2e-16 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.014G052300.2 pacid=42763206 polypeptide=Potri.014G052300.2.p locus=Potri.014G052300 ID=Potri.014G052300.2.v4.1 annot-version=v4.1 ATGCATCAGAAGAAATCAGAAATCCAAATCGGAAAAGAAAGCACCGGCATCTCTTCCGATTTCTCAACCACGTTAAACCCGCAATTGCTCTTCCTCCACC ACTTCCAACAACAGAATGACCCGATTACCCCTCCTTCTTCCAGTTCCTCCCCAACTCCTTACAAAAGACCTCTCTTAACGACGACGACCCATCATAGCCA AACCCCTCATCGTTCCAATTCACTCTTTAAATCCCCTACCATTTACCATTTTGCTACCACCCATCAACCCCAATCTTTCTTTTCTGTCACAACTGCCGTT AAAGCCGCTGCCTTTCGTTTTTTCCGCCGCCGCTTGGCTCGCCTGAAAGTGCACCTACGCTTGATTCTCTTGCTCTCGCTTCCCTTCTTTTATTTCTTGG TCTCGCACCCGAGTCATTCGTTTTTGCTTGATTTTTTGTCTGCTTTTGCATTTTCTGCTGCTTTGTTATTGTCTCTGAATTTAGCTCTGCCTAGATTGCC TTCAATTCGGCTGTTTTTATCGCGGTCATTTGCAATCAATAAGCTTAGGAATTCAGCATCTAGATCGCCTATACCGGTGTTCTGGTCAATAGGGTCGAGG TCGAAACCGGAGAAAAGGGCGGCTTCTGGTTGCTTTGTTCAGGTTTATAGTAACGGGGACGTCTATGAAGGTGAATTTCACAAGGGAAAGTTTTCAGGAA GTGGGGTTTATTATTATTATATGAGTGGAAGATATGAAGGTGATTGGGTTGATGGGAAATATGATGGCTATGGAGTGGAAACTTGGGCTAGAGGGAGTCG ATATCGAGGGCAATATAGGCAAGGACTCAGACATGGATTTGGTGTGTATAGGTTTTATACCGGAGATGTTTATGCTGGTGAATGGTCTAATGGACAAACT CATGGCTGTGGAGTTCATACTTGTGAGGATGGGAGTCGGTATGTTGGTGAATTCAAGTGGGGTGTCAAGCACGGACATGGGCATTACCATTTCAGGAATG GGGATACATATGCTGGAGAATATTTCGCAGACAAGATGCATGGATTTGGTGTCTATCATTTTGCAAATGGGCATCGGTACGAGGGAGCCTGGCATGAGGG TAGAAGGCAAGGCCTTGGAATGTACACATTCAGAAATGGGGAGACTCAGTCTGGTCACTGGCAAAATGGAATTCATGATGTCCCAAGCACGCAGAACACC TCTTATCCTGTATCTCCTGTTGCTGTTTATCATTCCAAAGTGCTCAATGCAGTGCAGGAAGCACGTACAGCATCAGAAGAGGCTTATGATGTTGCAAAAG TTGATGAAAGGGTAAATAGGGCAGTAGCGGCAGCTAACAGGGCAGCTAATGCAGCTAGAGTGGCTGCAGTTAAGGCTGTCCAGAAACAAATGCATCGCAA TAATAACAACGGTAACATTCCAATTGTGTGA
AA sequence Show only first row Show all	>Potri.014G052300.2 pacid=42763206 polypeptide=Potri.014G052300.2.p locus=Potri.014G052300 ID=Potri.014G052300.2.v4.1 annot-version=v4.1 MHQKKSEIQIGKESTGISSDFSTTLNPQLLFLHHFQQQNDPITPPSSSSSPTPYKRPLLTTTTHHSQTPHRSNSLFKSPTIYHFATTHQPQSFFSVTTAV KAAAFRFFRRRLARLKVHLRLILLLSLPFFYFLVSHPSHSFLLDFLSAFAFSAALLLSLNLALPRLPSIRLFLSRSFAINKLRNSASRSPIPVFWSIGSR SKPEKRAASGCFVQVYSNGDVYEGEFHKGKFSGSGVYYYYMSGRYEGDWVDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEWSNGQT HGCGVHTCEDGSRYVGEFKWGVKHGHGHYHFRNGDTYAGEYFADKMHGFGVYHFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGIHDVPSTQNT SYPVSPVAVYHSKVLNAVQEARTASEEAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQKQMHRNNNNGNIPIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17080			Histone H3 K4-specific methylt...		Potri.014G052300 [exp]	0	1
AT2G45000		EMB2766	EMBRYO DEFECTIVE 2766, structu...		Potri.014G057000 [exp]	8.48	0.8095
AT3G19650			cyclin-related (.1)		Potri.001G295000 [exp]	8.77	0.6901
AT5G13210			Uncharacterised conserved prot...		Potri.003G165200 [exp]	9.38	0.7992
AT2G27460			sec23/sec24 transport family p...		Potri.009G163300 [exp]	13.41	0.7644
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.015G005500 [exp]	17.74	0.7602
					Potri.001G011401 [exp]	19.74	0.6875
					Potri.011G073291 [exp]	21.79	0.7978
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	24.49	0.7533	Pt-DOF4.2
AT3G07660			Kinase-related protein of unkn...		Potri.014G169900 [exp]	25.61	0.7815
					Potri.001G439825 [exp]	26.26	0.7782

Compare expression of checked genes

Potri.014G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.