Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) AT2G28940 399 / 2e-136 Protein kinase superfamily protein (.1.2) AT4G17660 395 / 7e-136 Protein kinase superfamily protein (.1) AT3G09830 395 / 1e-135 Protein kinase superfamily protein (.1.2) AT5G03320 381 / 8e-130 Protein kinase superfamily protein (.1) AT2G39110 379 / 7e-129 Protein kinase superfamily protein (.1) AT5G15080 342 / 1e-113 Protein kinase superfamily protein (.1) AT3G28690 337 / 2e-113 Protein kinase superfamily protein (.1.2.3) AT3G01300 337 / 1e-111 Protein kinase superfamily protein (.1) AT5G01020 329 / 8e-110 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149100 [exp] 534 / 0 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 518 / 0 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 420 / 1e-144 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 410 / 2e-141 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 410 / 8e-141 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 405 / 4e-139 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 395 / 8e-135 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G077300 [exp] 343 / 4e-114 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 342 / 1e-113 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040135 [exp] 493 / 1e-174 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 487 / 3e-172 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10038711 [exp] 401 / 6e-137 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 393 / 2e-133 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 387 / 2e-131 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 379 / 4e-128 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005255 [exp] 346 / 6e-115 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10030668 [exp] 346 / 7e-115 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 335 / 1e-112 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 335 / 3e-112 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G052700.1 pacid=42763347 polypeptide=Potri.014G052700.1.p locus=Potri.014G052700 ID=Potri.014G052700.1.v4.1 annot-version=v4.1 ATGAAGTGTTTTCAGTACTACTTCAAGGACAAATCAAGAAGCAGGGGACGAAGATCAGCACCGGAATTGAAACAGCGAAGTATAACGAAGACCGATGATT CTTTATGCACTAGTGATGGGATGATCAAGTCTTCATGCTCAGAAACTTCACAGAGAGGTATATCAGAAATGTATGAAGAGAAGGCTCATAATCTGAGAGT CTTTTCTTTCTCAGAGCTCAGAAATGCAACTAATGGTTTCAGTAGGCTGTTTAAGATTGGGGAAGGTGGATTTGGTAATGTCTATAAAGGTTCAATCAAG CCTGCTGGTGGAGAAGGTGACCCTATTGTTGTTGCAATTAAGAAGCTTAACGCAGATGGCTTCCAGGGTCATAAACAATGGGTGACCGAAGTTCAATTTC TTGGTGTTCTGGAGCATCCAAATCTTGTCAAACTTTTAGGATACTGTGCCGTGGATGGCGAAAGAGGTATCCAGAGACTTCTTGTGTATGAGTTTATGCG AAACAAAAGTTTAGACGATCATCTTTTCAACAAGGCATATCCTGTGCTTCCCTGGAAGACAAGATTACAAATAATACTTGGAGCAGCTCAAGGATTAGCT TTTCTACATGAAGGGTTGGAAGTTCAGGTTATATATCGAGATTTCAAGACTTCCAATGTGTTATTAGATGAAGATTTGAAACCAAAGCTTTCAGACTTTG GGCTTGCTAGGGAGGGACCAATGGCTGGACGAACGCATGTCTCAACAGCAGTAGTTGGGACATATGGATATGCTGCGCCAGATTACATTGAGACAGGGCA TCTCACAGCCAGAAGTGATGTTTGGAGCTTTGGTGTGGTACTATATGAGATTCTTACGGGCAGGCGATCGTTGGAAAGAAACAGGCCGAAAGTGGAGCAG AAGTTATTGGAATGGGTAAAGCAGTTCCCTGCTGATAGTAAAAAGTTTGGTTTGATAATGGATCCACGACTTGAAAACCAGTATTCTATGAGTGCAGCTC GGAGGATTGCCAGGTTAGCAGACAGTTGTTTGTTAAAGAGCGCAAAAGGTCGACCAAAGATGAGTCAGGTGGCAGAGACCTTGGAACAGATAATCCAAGA TTCATCAGAAGGAAGCCCTTCAAAGAATAGTTTTGAAGCCACTGGAAATGACGACCTGATTGACTCGAGTAAGAAGCCGGATCATATAGAGGTCTCTGAG TCTTGGAAACGGCGAATGGCACACCTGGCGAAACTCAGTGAGCACGTTGACGGTGCCAGTAGAAGAAGATTTGTGATCATGCAGAGGGCCAAAGTACCCT GA
AA sequence Show only first row Show all	>Potri.014G052700.1 pacid=42763347 polypeptide=Potri.014G052700.1.p locus=Potri.014G052700 ID=Potri.014G052700.1.v4.1 annot-version=v4.1 MKCFQYYFKDKSRSRGRRSAPELKQRSITKTDDSLCTSDGMIKSSCSETSQRGISEMYEEKAHNLRVFSFSELRNATNGFSRLFKIGEGGFGNVYKGSIK PAGGEGDPIVVAIKKLNADGFQGHKQWVTEVQFLGVLEHPNLVKLLGYCAVDGERGIQRLLVYEFMRNKSLDDHLFNKAYPVLPWKTRLQIILGAAQGLA FLHEGLEVQVIYRDFKTSNVLLDEDLKPKLSDFGLAREGPMAGRTHVSTAVVGTYGYAAPDYIETGHLTARSDVWSFGVVLYEILTGRRSLERNRPKVEQ KLLEWVKQFPADSKKFGLIMDPRLENQYSMSAARRIARLADSCLLKSAKGRPKMSQVAETLEQIIQDSSEGSPSKNSFEATGNDDLIDSSKKPDHIEVSE SWKRRMAHLAKLSEHVDGASRRRFVIMQRAKVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47070			Protein kinase superfamily pro...		Potri.014G052700 [exp]	0	1
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G033000 [exp]	3.60	0.8863
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412300 [exp]	8.77	0.8687
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	10.24	0.8727
AT2G23450			Protein kinase superfamily pro...		Potri.014G038600 [exp]	16.79	0.8724
AT3G14280			unknown protein		Potri.003G072400 [exp]	18.00	0.8584
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.012G076400 [exp]	19.05	0.8370
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125501 [exp]	19.07	0.8741
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	19.18	0.8670	Pt-WRKY11.1
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232500 [exp]	22.31	0.8835
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.004G060900 [exp]	23.55	0.8553

Compare expression of checked genes

Potri.014G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.