Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39710 273 / 2e-79 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 272 / 3e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09060 258 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 253 / 3e-73 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G59900 258 / 5e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 252 / 8e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 251 / 9e-73 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 251 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 258 / 4e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 248 / 5e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 287 / 4e-85 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 285 / 8e-84 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 270 / 7e-79 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 272 / 3e-77 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 263 / 3e-77 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G236800 [exp] 269 / 8e-77 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 263 / 5e-76 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G249800 [exp] 263 / 2e-75 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G015900 [exp] 261 / 2e-75 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018113 [exp] 968 / 0 AT5G01110 293 / 3e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022401 [exp] 799 / 0 AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 285 / 1e-83 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 277 / 7e-81 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 276 / 7e-79 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 265 / 6e-76 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 258 / 2e-74 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004570 [exp] 257 / 8e-73 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 256 / 8e-73 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 250 / 6e-72 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G052800.1 pacid=42762761 polypeptide=Potri.014G052832.1.p locus=Potri.014G052800 ID=Potri.014G052800.1.v4.1 annot-version=v4.1 ATGTCTGATGAAGTAGGCTATGTGGTGGGCAACTCCCTTAAGGTACACTACTTTAAATCTCCCTTGTTTTCCCACCAAACACTGAACTCGCAAATGTTAA CTCTCTTCAAACTCACTTGTCTCCCCAAAAAGACAAATTCTTTCTGTTCTAGTTCTTGTAATACTAGAAAGATTAATTATTTTGATCAGTTTCTGCCTCT TTTTGATAAAAAGATCGATTCTTTAAGCTATTTGAACTCAAATGAGAGGAGGAGAGTAGTTGTTGGGCTGTCTAGAATTATTAAACAAGGCCAAGGTTAC ATTTTGAAGGGATTTGCTAAAAACAATTGCCCTTATTTTTTAGTTAAGATAATGAAATCATTAGAATCTAGAGAAACTGCATTTGGGTTTTTTAAGTTTG CATTTCAAGATGATTCTGATGAAATGGTCAAGTCTTCTTGTGTCGCGGCACATGTTTTAGGTGCACAGAATCTCAAGTTCCTTGCTCAAGATGTGGTTTC TTGGGTTATTAGGAGAGTTGGGGTTGATAGGAGTAGGGAGGTAGTGGAGTTTATGTGGAAAAGGCATGCTGAATTTGAGTCGGATTTCTCAGTTCTCGAT ACGCTTATGCGGGGCTTTTTGAAAGTGGAAATGGGTTGTGAGGCATTGGAGATTGTGGGAAGGATGAGGGAGGTGGGTTTGAGGCCAAGTTCATCAGCAA TTACAATTCTTTTTAAGTTGTTGCTTAGAATTGGTGATCATGGTAGTGTTTGGAAGTTGCTTAGGGGTATGATTCATCAAGGGCCTAGACCTTGCAATCG TAACTTTAATGCGGTGATTCTTGGTTTCTGTAGAAAAGGACATGTTAAAGTTGGGGAGAGTTTGTTGTGCGTGATGCAGAAGTTTAAGTGTCAACCAGAT GTTTATGCGTATAACATTTTGATTAATGCATACTGTACAAGGGGACAGACTTTTGATGCACTTGGTTGGATGCGCTTCATGATCGATAATGGTTGTACAC CGAGCTTGGTTACTTTTGGTACAGTCATAAATGCATTTTGCAATCAGGGAAATATGATGGAAGCAAGGAATCTTTTTGATGGGATGAAAGAGGCCGGTCA CATTCCCAATGTTGTATGCTATAATACTTTGATGAATGGATATGTTAAGGCGAGGGACATTGGTCAGGCAAACATGCTTTATGAAGAAATGAAGAGCAAG GCTGTAGCTCCTGATTGTACAACTTTTAATATTCTGGTTGCAGGGCATTATAGATATGGAAGAGAGGAAGACCGTGACAGATTGTTGAGGGATTTGTCAC AATCAGGCTCGCTCTCAATTAGTTCACTATATAATATTTGTGTTTCAGGCTTGTGTTGGGCTGGCTGGTTGGATGAGGCCATGAAATTTTTAGAGGATAT GCTTGAGAAAGGAATAACTCCAACTGTAGTTGCTTTTAATTCAATAATAGCAGCTTATAGCAGGGCTGGCTTAGAAGAGAAAGCCTATAAAGCATATAGA ATGATGGTTAAATTTGGTTTATTTCCTTCATCTTTGACATGCAGTTCACTAATCATGGGTTTATCCAAGTTGTGGAGGCTGCAAGAAGCGAGGGACCTTT TGTATGAGATGATAGTAGAAGGCCTTCCCATCAACAAAGCAGCTTTTACTCTGCTTTTGGATGGGTACTTCAGGATGGGGGATGTGGCAGGTGCTTATAG CCTGTGGAATGAGATGGAAGGGAGGGGGATACATCCTGATGCTGTTGCCTTTTCAGCCTTTATTAATGGTCTTTCTATAGTTGGTCTAGTGGATGAGGCA TATGATGTATTTTTACAAATGTCAAAAAAAGGGTTCATGCCCAACAATTTTGTGTATAACTCTTTGATCCGTGGCTTTTGCAACAGTGGGAGGCTGCAGG AAGCATTGATGTTGGAGAGGGAGATGGCGCGAAAGGGTCTTCTTCCTGATATTTTTACTACCAATATAATCATTAACGGTCTCTGTAAAGAAGGCAGGAT GAAGTCAGCAAGTGATGTATTTAGAAACATGCACCATACTGGGTTGATCCCTGATATTGTCACCTACAATACTTTGATTGATGGATACTGTAAAGCATTT GACACAGTTAGTACAGATGAAGTCGTGAATAAAATGTATGCCACTGGATGGGACCCAGATATCACTACTTATAATATTCGTCTTCATGGCTTATGTACTG GTCGGAAAATGAGTCGAGCTGTGATGATGCTGGAGGAGCTTATTTCAGCAGGTGTTGTTCCGGACACAGTAACATACAACACTGTTATGAATGGTGTTTG TACTGACGTACTGGAGCGCGCCATGATTGTAACTGCCAAATTGCTTAAGATGGCATTTGTTCCTAATGTCGTTACAGCCAATCTACTATTATCTCACTTT TGCAAGCAGGGAATGCCTGAAAAGACCATAATGTGGGGTCAGAAGTTGAATGAGATCTCCTTTGGTTTTGATGAGATTTCCATAAAATTAATGGATAGAG CCTACCGTAACATCCAAGATAATGTTGACGTTCCAAAACCACCACCTGAAAAGAGCCTGTTTCTGGATTTCCTCATGTACGTTACATATGATTATTTGAG CAGAAATAGTCTTAAAAAGAATGAAAATCAGGGTTCACTTAAACGGATGGAAATTGGTTATGGTGGATCCTGA
AA sequence Show only first row Show all	>Potri.014G052800.1 pacid=42762761 polypeptide=Potri.014G052832.1.p locus=Potri.014G052800 ID=Potri.014G052800.1.v4.1 annot-version=v4.1 MSDEVGYVVGNSLKVHYFKSPLFSHQTLNSQMLTLFKLTCLPKKTNSFCSSSCNTRKINYFDQFLPLFDKKIDSLSYLNSNERRRVVVGLSRIIKQGQGY ILKGFAKNNCPYFLVKIMKSLESRETAFGFFKFAFQDDSDEMVKSSCVAAHVLGAQNLKFLAQDVVSWVIRRVGVDRSREVVEFMWKRHAEFESDFSVLD TLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPD VYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSK AVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYR MMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEA YDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCKAF DTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELISAGVVPDTVTYNTVMNGVCTDVLERAMIVTAKLLKMAFVPNVVTANLLLSHF CKQGMPEKTIMWGQKLNEISFGFDEISIKLMDRAYRNIQDNVDVPKPPPEKSLFLDFLMYVTYDYLSRNSLKKNENQGSLKRMEIGYGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	0	1
AT1G69290			Pentatricopeptide repeat (PPR)...		Potri.008G095800 [exp]	2.00	0.8931
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	2.82	0.8988
AT4G20020			unknown protein		Potri.004G218650 [exp]	4.00	0.8738
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Potri.004G134300 [exp]	4.89	0.8774
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	5.09	0.8623
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.001G102501 [exp]	5.19	0.8732
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	6.48	0.8596
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	6.92	0.8952
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	7.07	0.8841
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	9.16	0.8749

Compare expression of checked genes

Potri.014G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.