Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44660 669 / 0 ALG6, ALG8 glycosyltransferase family (.1) AT5G38460 102 / 4e-23 ALG6, ALG8 glycosyltransferase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114100 [exp] 100 / 4e-22 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2) Potri.004G100500 [exp] 95 / 1e-20 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043344 [exp] 707 / 0 AT2G44660 725 / 0.0 ALG6, ALG8 glycosyltransferase family (.1) Lus10019495 [exp] 705 / 0 AT2G44660 717 / 0.0 ALG6, ALG8 glycosyltransferase family (.1) Lus10017594 [exp] 96 / 1e-20 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [poplar] [flax] GT-C PF03155 [poplar] [flax] Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.014G053200.1 pacid=42762419 polypeptide=Potri.014G053200.1.p locus=Potri.014G053200 ID=Potri.014G053200.1.v4.1 annot-version=v4.1 ATGGAAGATCAAAGAAAACCTGAAAAAAACAAAACATCAACAACCTCAAATCTCTTATGGTTCTTTGGCGTATCAACATGTGTAAAACTCCTATTAATCC CATCATACCATAGCACGGATTTTGAGGTCCATAGAAACTGGCTAGCTATAACACATTCACTCCCTCTCGATCAATGGTACATTGACAAAACCAGTCCTTG GACTCTTGATTACCCACCTTTCTTTGCTTATTTTGAATACATCATCTCCTTTTTTGCTCACTTAGTTGACCCAAAAATCGTAGACCTTGAAAAGGGACTC GATTATAAGGCAGAGAGTGTGGTTTTATTTCAGAGATTGAGTGTGATTGTGTGTGATTTCGTTCTTTTATATGGGGTTTATAGACTGAGCAAGAATTTTT CCATGGGGTTTAAAGAGAGAGTTTTGATGTGGGTTTTGGTTGTTTGGTCACCTGGGCTAGTGATTGTAGATCACATGCATTTTCAGTATAATGGGTTCCT GCTAGGGTTGTTGATGATGTCGATTTCGTATTTGATGGAAGGGAGGGATTTGATGGGTGGGTTCATTTTTGCTGTTTTGTTGTGTTTTAAGCATTTGTTT GCTGTGGCCGCTCCTGTTTATTTTGTTTATTTGTTGAGGCATTATTGTTGGAAAGGATTTGTTAAGGGTTTCTGGAGGATTTCGGTTTTGGGAGCTGTTG TTGTTGCTGTTTTTGCTGCTGCTTATGGTCCCTTTGTTTATCTCGGGCAGATGCAACAAGTCATCAGCCGCATGTTTCCTTTTGGAAGGGGACTTTGCCA TGCATACTGGGCCCCAAACTTTTGGGTGTTTTACATTATATTAGATAAAGGGCTCGCTTTCTTACTTAAAAAACTTGGGCTGAACATCCCGGTACCGGCA GCCTCTTTCACTGGTGGGCTAGTAGGGGATTCGTCACCATTTGCTATACTGCCTCAGGTCACCCCCCTGACAACATTCATTATGGTCCTGCTTGCCTTAT CTCCATGTCTTATCAAGGTCTGGAAGAATCCTCAGCCACGATCAGTCGCTAGATGGATAGCTTATGCTTATATGTGTGGCTTTTTGTTTGGGTGGCATGT TCATGAAAAAGCATCACTCCACTTTGTCATCCCTTTGGCAATTGTCGCAGGAAACAGTTTGGAGGATGCAAGGCATTATTTCTTGCTTTCTATAGTGTCT TGCTACTCGTTGTTTCCCCTTCTATATGAAGCCCAAGAGTATCCAATCAAAGTGCTGTTGCTGCTGTTACATTCAGTTCTGATGTGGCAGAGCTTTTCTG CACTATTCACCACGGATGCAACAGCCAAAGCAGTAGTTTCAGCAAAGAAAACAGACAGACAGGTGGGTTTGAAGGGAAGTTCCAGTGATGTTGTTGAAAA AGGAGGATTCCATATCGGATGGATTGGAAGGTGTTACCTGTTTGGTCTGCTGGCTGTTGAGATTTGGGGTCAGTTTCTGCACCCTTACCTTCTCGGAGAT AAGCTTCCTTTTGTACCACTTCTATTAATTTCTATATATTGTGCACTGGAAATTATGTACTCATGGATATGGCAGCTAAGACAGATTATGGTATCCACCT GA
AA sequence Show only first row Show all	>Potri.014G053200.1 pacid=42762419 polypeptide=Potri.014G053200.1.p locus=Potri.014G053200 ID=Potri.014G053200.1.v4.1 annot-version=v4.1 MEDQRKPEKNKTSTTSNLLWFFGVSTCVKLLLIPSYHSTDFEVHRNWLAITHSLPLDQWYIDKTSPWTLDYPPFFAYFEYIISFFAHLVDPKIVDLEKGL DYKAESVVLFQRLSVIVCDFVLLYGVYRLSKNFSMGFKERVLMWVLVVWSPGLVIVDHMHFQYNGFLLGLLMMSISYLMEGRDLMGGFIFAVLLCFKHLF AVAAPVYFVYLLRHYCWKGFVKGFWRISVLGAVVVAVFAAAYGPFVYLGQMQQVISRMFPFGRGLCHAYWAPNFWVFYIILDKGLAFLLKKLGLNIPVPA ASFTGGLVGDSSPFAILPQVTPLTTFIMVLLALSPCLIKVWKNPQPRSVARWIAYAYMCGFLFGWHVHEKASLHFVIPLAIVAGNSLEDARHYFLLSIVS CYSLFPLLYEAQEYPIKVLLLLLHSVLMWQSFSALFTTDATAKAVVSAKKTDRQVGLKGSSSDVVEKGGFHIGWIGRCYLFGLLAVEIWGQFLHPYLLGD KLPFVPLLLISIYCALEIMYSWIWQLRQIMVST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44660			ALG6, ALG8 glycosyltransferase...		Potri.014G053200 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.008G005200 [exp]	2.23	0.8222	DWF5.3
AT3G18510			unknown protein		Potri.011G140300 [exp]	4.89	0.8198
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.013G111200 [exp]	14.00	0.7758	Pt-FUT1.2
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	17.60	0.8007
AT2G43780			unknown protein		Potri.019G096500 [exp]	21.90	0.8193
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	29.39	0.8181
AT2G26920			Ubiquitin-associated/translati...		Potri.003G191600 [exp]	34.29	0.7916
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.001G073500 [exp]	42.98	0.7685
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	52.24	0.7897
AT4G23930			Late embryogenesis abundant (L...		Potri.001G090400 [exp]	59.74	0.7952

Compare expression of checked genes

Potri.014G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.