Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 136 / 1e-34 RING/U-box superfamily protein (.1.2) AT1G71980 74 / 4e-14 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 74 / 5e-14 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 72 / 2e-13 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT2G34990 70 / 5e-13 RING/U-box superfamily protein (.1) AT3G18930 70 / 8e-13 RING/U-box superfamily protein (.1.2) AT4G30400 69 / 2e-12 RING/U-box superfamily protein (.1) AT4G26580 69 / 2e-12 RING/U-box superfamily protein (.1.2) AT1G12760 67 / 5e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT5G52150 65 / 5e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140500 [exp] 622 / 0 AT5G45290 119 / 1e-28 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 281 / 2e-88 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 251 / 1e-76 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 147 / 2e-38 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 146 / 6e-38 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.001G351466 [exp] 70 / 1e-12 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.019G082500 [exp] 70 / 1e-12 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.003G075200 [exp] 66 / 2e-12 AT5G05280 137 / 2e-41 RING/U-box superfamily protein (.1) Potri.013G111500 [exp] 69 / 3e-12 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001683 [exp] 270 / 9e-85 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 268 / 2e-83 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 118 / 2e-28 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10013618 [exp] 73 / 4e-14 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10006074 [exp] 71 / 5e-13 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 71 / 9e-13 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10011475 [exp] 70 / 1e-12 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10009438 [exp] 70 / 2e-12 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10023112 [exp] 69 / 2e-12 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10043426 [exp] 67 / 3e-12 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.014G053500.3 pacid=42763630 polypeptide=Potri.014G053500.3.p locus=Potri.014G053500 ID=Potri.014G053500.3.v4.1 annot-version=v4.1 ATGGGTTCAAGTAAGAGCAGTTTAAATGGGTCAGGTTCAGATTCAGGGTCAGGGACTAACAGGTTCAAGCGCAGAGCCCTTGCTTCTCTCTTTTGTGGTG GTTCTGTTTCTCGAGCTCCTATTGAGATGGGTGATCATGTAGATGAATCATTGACAGGATCTCTTGAAAATCTAGCTACTTGTCATGATGTGTCAGCGAG CTCTAAGCAGGCCTCATTTTCTAACCTTGGTTCGGAAACTGGGTTAAGTAGTTCCAGTGTTGAAAGTGGGGACTTATCTCGAAGTAGTAATGGTAAGGTT GAGGATAGTCCTGCTTCTAAGAATAGCGAGTTACAATCTCAGCAGTCAAATGTCAATGACAGTCTTATGGAAGCTCATGCAGCTAGTGCTTCTGTAAAAG AACAGACACCAACAGCATCTGTCTCTGATGTTACAACGGTGGCAGGTGTTGTAGGTCTGGATTCTGAGAATCTAGATTCGAATGAGTCGTCTGTTTCAGA TGCAAGTATTGATTTCTCCAATACAAATTCTGTTATTCCTGCTTCCTTAGTACCTCCACAACCACTTTCAGAATTTGTCTCATCTGATGGGGAACAAGAA GCGAGGGCTGCAAGATTGGTTGTTGTTGATGTGGTGAGCATACAATCCAACATTTTCTCAAGTAGCTTTGCAGAAATTAGTAATCGTGAGGCAAGAAGGA ATAGTAGAAGGATGTTTTGGGATGCTTTTTCTAGAAGCAGTTTGAGAAGGAATGGAGGTTCCCAAACCTTAGTTCTTACAACTAGTCATGCTGATGATCT AGGATCTCATGACAGATGGCTCCTTGATTTTAGTGGCGATCTACATTTCGATGGAGTTGGTCGTGGATCTAGATATCCTAACACTAGAAATCGACGCAGG AGTGAACGGCCGTGGCAATCAAGATATGAGCAGAGAGAAAGATTTCATGATGTGCATGATGAACAAGGTTGGGAAGCTTCCTTGTGCCCAGCTGGCCTTC ATCGTAATGGTACATGTTTATGTGAACCCTCTTCTGTGGCTGAGGAGTCTAACAGCCATGCAAATATTTCCCAAATAATTCTGTTGACAGATGCACTTTT TGAGGTTTTAGAGGAAATTCATCGCCATCACCTATCCCTTTCACCTTCTATGCTCTCTCTTCCTGCTCCTGAAGCTGTTGTAAATTCGTTACCTCTGAAG AATTATCAAAAGTCTCCTGGAACTGAGAATGTGGCACAGCATGAACAACAGTGTCACATTTGCTTGGTTGATTATGAGGAAGGAGATAAAATTCGAGTCC TCCCATGTTCTCATGAATTTCACATGGCATGTGTTGACAAATGGCTCAAGGATATACATGGTGTTTGCCCTCTCTGCAGAGATGATGTTTGCAAGGGTAC GGCTGAAAGTTCGGCCTCAAACCCAGAGAGCACGTCACCTTGA
AA sequence Show only first row Show all	>Potri.014G053500.3 pacid=42763630 polypeptide=Potri.014G053500.3.p locus=Potri.014G053500 ID=Potri.014G053500.3.v4.1 annot-version=v4.1 MGSSKSSLNGSGSDSGSGTNRFKRRALASLFCGGSVSRAPIEMGDHVDESLTGSLENLATCHDVSASSKQASFSNLGSETGLSSSSVESGDLSRSSNGKV EDSPASKNSELQSQQSNVNDSLMEAHAASASVKEQTPTASVSDVTTVAGVVGLDSENLDSNESSVSDASIDFSNTNSVIPASLVPPQPLSEFVSSDGEQE ARAARLVVVDVVSIQSNIFSSSFAEISNREARRNSRRMFWDAFSRSSLRRNGGSQTLVLTTSHADDLGSHDRWLLDFSGDLHFDGVGRGSRYPNTRNRRR SERPWQSRYEQRERFHDVHDEQGWEASLCPAGLHRNGTCLCEPSSVAEESNSHANISQIILLTDALFEVLEEIHRHHLSLSPSMLSLPAPEAVVNSLPLK NYQKSPGTENVAQHEQQCHICLVDYEEGDKIRVLPCSHEFHMACVDKWLKDIHGVCPLCRDDVCKGTAESSASNPESTSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	0	1
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	1.00	0.8358	Pt-ACA1.1
					Potri.010G198100 [exp]	2.00	0.7947
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	3.00	0.7980
AT3G11760			unknown protein		Potri.018G027200 [exp]	3.74	0.8166
AT2G20562			unknown protein		Potri.011G114600 [exp]	3.87	0.7868
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	4.89	0.7749
AT5G17680			disease resistance protein (TI...		Potri.017G104301 [exp]	8.48	0.7728
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	10.24	0.7743
AT1G28760			Uncharacterized conserved prot...		Potri.013G064800 [exp]	12.48	0.7452
AT2G21120			Protein of unknown function (D...		Potri.004G168900 [exp]	12.64	0.6883

Compare expression of checked genes

Potri.014G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.