Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATL4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60220 148 / 1e-41 ATL4 TOXICOS EN LEVADURA 4 (.1) AT4G33565 64 / 3e-11 RING/U-box superfamily protein (.1) AT5G10380 62 / 2e-10 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G48030 60 / 6e-10 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G27940 59 / 7e-10 RING/U-box superfamily protein (.1) AT2G20030 58 / 3e-09 RING/U-box superfamily protein (.1) AT5G17600 58 / 3e-09 RING/U-box superfamily protein (.1) AT5G40250 58 / 3e-09 RING/U-box superfamily protein (.1) AT1G72220 58 / 4e-09 RING/U-box superfamily protein (.1) AT3G03550 57 / 5e-09 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140600 [exp] 300 / 1e-100 AT3G60220 194 / 3e-59 TOXICOS EN LEVADURA 4 (.1) Potri.007G111900 [exp] 64 / 5e-11 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 62 / 2e-10 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 61 / 3e-10 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.009G073900 [exp] 60 / 4e-10 AT5G58580 102 / 9e-26 TOXICOS EN LEVADURA 63 (.1) Potri.003G093100 [exp] 60 / 9e-10 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G279200 [exp] 59 / 1e-09 AT5G58580 101 / 4e-25 TOXICOS EN LEVADURA 63 (.1) Potri.006G239500 [exp] 59 / 2e-09 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 59 / 2e-09 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012745 [exp] 65 / 1e-11 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10019973 [exp] 62 / 3e-10 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10006493 [exp] 60 / 5e-10 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10011702 [exp] 59 / 1e-09 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10036466 [exp] 59 / 2e-09 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10009511 [exp] 59 / 2e-09 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10037490 [exp] 59 / 2e-09 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10013618 [exp] 57 / 4e-09 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10015502 [exp] 58 / 5e-09 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10034953 [exp] 57 / 8e-09 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.014G053600.1 pacid=42764051 polypeptide=Potri.014G053600.1.p locus=Potri.014G053600 ID=Potri.014G053600.1.v4.1 annot-version=v4.1 ATGTCTGCTCCTCCAGACTTGTTCACCACAACACCCACCGATACGGCCAGCGGAGGCACCAAGACTTCGCCGTTTCAGAACCTTAACTCAAGCATATTGA TCATCATTTTAATCCTCTCCATCACTCTGTTAGTCTCTGTTTCTCTTTGCTTCCTTCTTCGTGTCTTAAACCGCCGTTGCCTCAGCCACCTCTCTCCCTC TAGAACCACCGCCACAACTACCACGATAACAGCCCTCTCCTCCTCTAACCGTCACTCAGGTAACAACAACCACCGTGTTTCACCAGAAACCTTAGAGCCT TCCATTGCTGACTCACTTCCTCTCTTCTCCTTTTCCTCCATCAAACGGCGGTCATCCTCCTCCCCTGCTATCTCCGGCGGCGATTGCGCGGTTTGTCTGT CCAAGTTCGAACCGGATGATCTCTTGCGATTGCTTCCGCTTTGTTGTCATGCTTTCCATGCACATTGCATTGACACGTGGGTCAATTCTAATCAATCATG TCCTCTCTGCCGGTCTCCTATTCTTATATCGGAGTCCGACCTCGCCAAAGCTATCTCCGATGTCGAAGCTCGCGGTGGTGATAGTTTCCGCCTTGAGATT GGTTCTATTAGCCGCCGAGAACATCCTGCTCCTAACTCGGCCTCCTCTCTCTCCACATCCGCCGCCTCCTTTGCTGCAGGCGAGCATCGGAGCTCGTACT CTGTTGGTTCGTTTGATTACGTCGTGGAGGAGGAATCGGAGGTTACTATCAATCAATCACACAGGAGGAGCATGTCGAAGGAGAGTGGTGGCGGTGGCGG TCCGACATTGTCCGAGCAGCAGATTTTGGCAGCGGAAGTGGCTGCGGCGAGAGGAAGTTGGTTAAGAGAATACGTTGACCGTCTATCGGCTTCTCTCTCT TCACGCACGGCATCGTTTAGAGGTTCTGGAAGGTTCTTTACGGGAAGCAGTCGCCGGAGCGAGATCGCCGGTGTTGGGGATTATGATTTGGAGGCGAACC GTGTAGGAGAAGAAATTAGCGAACTGTTTCGTTGGTTTTCAGGGGTATAA
AA sequence Show only first row Show all	>Potri.014G053600.1 pacid=42764051 polypeptide=Potri.014G053600.1.p locus=Potri.014G053600 ID=Potri.014G053600.1.v4.1 annot-version=v4.1 MSAPPDLFTTTPTDTASGGTKTSPFQNLNSSILIIILILSITLLVSVSLCFLLRVLNRRCLSHLSPSRTTATTTTITALSSSNRHSGNNNHRVSPETLEP SIADSLPLFSFSSIKRRSSSSPAISGGDCAVCLSKFEPDDLLRLLPLCCHAFHAHCIDTWVNSNQSCPLCRSPILISESDLAKAISDVEARGGDSFRLEI GSISRREHPAPNSASSLSTSAASFAAGEHRSSYSVGSFDYVVEEESEVTINQSHRRSMSKESGGGGGPTLSEQQILAAEVAAARGSWLREYVDRLSASLS SRTASFRGSGRFFTGSSRRSEIAGVGDYDLEANRVGEEISELFRWFSGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Potri.014G053600 [exp]	0	1	ATL4.2
AT4G38520			Protein phosphatase 2C family ...		Potri.004G177100 [exp]	4.24	0.7134
AT5G53880			unknown protein		Potri.011G117001 [exp]	10.63	0.7275
					Potri.016G037200 [exp]	11.53	0.6547
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207400 [exp]	17.32	0.6537	ILL1,Pt-ILR1.2
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	25.39	0.6996
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.010G057100 [exp]	40.24	0.6461
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.010G082600 [exp]	51.70	0.6410
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	54.99	0.6389
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	60.31	0.6585	PtrAUX1,AUX1.2
AT2G17080			Arabidopsis protein of unknown...		Potri.005G248950 [exp]	60.56	0.6452

Compare expression of checked genes

Potri.014G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.