Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44930 192 / 1e-54 Plant protein of unknown function (DUF247) (.1) AT2G28580 185 / 9e-52 Plant protein of unknown function (DUF247) (.1) AT4G31980 187 / 1e-51 unknown protein AT3G50150 173 / 9e-48 Plant protein of unknown function (DUF247) (.1) AT5G11290 162 / 5e-45 Plant protein of unknown function (DUF247) (.1) AT3G50170 166 / 8e-45 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 163 / 8e-44 Plant protein of unknown function (DUF247) (.1) AT1G67150 155 / 4e-42 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50160 157 / 9e-42 Plant protein of unknown function (DUF247) (.1) AT2G36430 152 / 2e-40 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G008500 [exp] 416 / 2e-140 AT2G44930 194 / 9e-56 Plant protein of unknown function (DUF247) (.1) Potri.005G007500 [exp] 409 / 9e-138 AT2G44930 151 / 1e-39 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 333 / 2e-109 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) Potri.014G053700 [exp] 322 / 3e-104 AT3G60470 164 / 1e-44 Plant protein of unknown function (DUF247) (.1) Potri.012G011800 [exp] 301 / 5e-97 AT2G44930 173 / 1e-48 Plant protein of unknown function (DUF247) (.1) Potri.012G035100 [exp] 296 / 4e-95 AT2G44930 164 / 3e-45 Plant protein of unknown function (DUF247) (.1) Potri.012G035001 [exp] 292 / 3e-93 AT2G44930 164 / 4e-45 Plant protein of unknown function (DUF247) (.1) Potri.017G019400 [exp] 267 / 9e-84 AT2G44930 240 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.017G019700 [exp] 263 / 5e-82 AT2G44930 220 / 6e-66 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009871 [exp] 171 / 2e-47 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 161 / 9e-44 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 159 / 2e-42 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 154 / 4e-41 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 154 / 6e-41 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 153 / 1e-40 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 146 / 4e-38 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 144 / 9e-38 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 144 / 2e-37 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 142 / 6e-37 AT4G31980 251 / 5e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.014G054100.2 pacid=42764419 polypeptide=Potri.014G054100.2.p locus=Potri.014G054100 ID=Potri.014G054100.2.v4.1 annot-version=v4.1 ATGGGAGAGATTCGTTCACCATACTTTTCTATTGATCAAGAACACCTCAAAGATAATGCTGAAATTCGTTCACCATATTTCTCAAGTGGTGAAGACTACC TTGGAGTTAATGCTGAAATTCGTTCGCCATATTTTTCATTTGATACTCAAGATTACCATGGAGATAATGCCGGAATTCATTCCTCGTATTTTTCAGCTGC AGACTACCATGGAGAGGATGCTGAAATTCCTTCTGGAACATTCTTTCACCAAGATAATATTGTTGAGAATCCATACAATGCAGAAAATTTTGTTGAGCAG GATATTGTTCAAAACATATACAACACAGAAAAGCTCATTCAACGGGCAGAAATTGAAAAACTGTACTCGGATCTAGATCTTGAAGCTGGAGCAGAATATA GAATCGTGAAATTAGTTCTAAATGATGAGAATTGTATCTACAGAGTTCCTGATGCACTTCGGAAATCAAATGAAGCCATCTATACTCCTCAAGAAGTTTC TATAGGTCCTATTCACCGTGACAAGAAGAATTTGCAGCCCATGACAACGCAAAAGGTGAGATATTTGAAAGAATTTTGTAACAGGGTGGTAGGGGAAACA AGGGTGCAACAAGTGAAGTTCCTGGAGAAAATTTGGAACACCATTAAAGAGGATGAAGAGAGGATCCGCCGATGTTATGGAGATGGTGCTCATGAAGTTG CAGAAAATGATCAGTTTGCGAAAATGGTGTTGTTGGATGCTGTTTTCATCTTGGAGTACTTGTTGAGGAATAAAGATTTTAAAAAATATGGAGATGATTC CTTATTGCGTAGAAACGGGTTAAGGTTTCGGATTCGACAAGACTTCTTGCTGCTCGAGAATCAGTTGCCATTCTTCATTCTTGAGAAATTATATGACCAT CTTCTTGAAGACGGCGAAGGAAATTATACTTCTTTTCGAGATCTTGCCTACGAGTACTTAAATAGGTACAATGCGAGTGCATACAAGCCGAGCGACAAGG AGATATTACATTTCACCGATTTGGTCAGATCTTCATTATCCGTCAACCATCCAGATCCGAGGAGTGACGAACCGATTGGAAAATTTTATAGCGCAACCAA GCTGCATGAGGCAGCGATTAATTTTAAGGAATTTCGAGATGAATGCTTACTTGACGTAAAATTTTCTTCTACAAAAGGTGAGTTACGTATACCACGTCTT CGGATAGACCACCACACTGAACTTCTCTTCGGAAACCTCATTGCCTTGGAGCGGTGTCATTATAAAGGAGAAGAGTACATCTGCCATTACGTTAAGCTAC TTGATACTCTTGTTGCCAAAACCAAAGATGTGGATCTCCTCATTAAAAATAAAATCATTGACACAGACAGAGATGGTGCTTCAGTGAAGAATCTGATTGA CAAACTTTCGGCAGAAACTTCTGAAGAATATTCCATTTACTATAACCTCTACAAGCAGCTGGATCAACACTACCAGAACTCCTGGTTGAAAAATAGCGCA TACTTTAGAGAGGTATATTTTGGAAACCTTTGGAGAAGTACTGCAACTGTTAGTGCAGCTGTCTTGCTCCTCTTCACTTTTGTACAAACAATTTGTGCAG TCGTTGCCTTGCGCTAG
AA sequence Show only first row Show all	>Potri.014G054100.2 pacid=42764419 polypeptide=Potri.014G054100.2.p locus=Potri.014G054100 ID=Potri.014G054100.2.v4.1 annot-version=v4.1 MGEIRSPYFSIDQEHLKDNAEIRSPYFSSGEDYLGVNAEIRSPYFSFDTQDYHGDNAGIHSSYFSAADYHGEDAEIPSGTFFHQDNIVENPYNAENFVEQ DIVQNIYNTEKLIQRAEIEKLYSDLDLEAGAEYRIVKLVLNDENCIYRVPDALRKSNEAIYTPQEVSIGPIHRDKKNLQPMTTQKVRYLKEFCNRVVGET RVQQVKFLEKIWNTIKEDEERIRRCYGDGAHEVAENDQFAKMVLLDAVFILEYLLRNKDFKKYGDDSLLRRNGLRFRIRQDFLLLENQLPFFILEKLYDH LLEDGEGNYTSFRDLAYEYLNRYNASAYKPSDKEILHFTDLVRSSLSVNHPDPRSDEPIGKFYSATKLHEAAINFKEFRDECLLDVKFSSTKGELRIPRL RIDHHTELLFGNLIALERCHYKGEEYICHYVKLLDTLVAKTKDVDLLIKNKIIDTDRDGASVKNLIDKLSAETSEEYSIYYNLYKQLDQHYQNSWLKNSA YFREVYFGNLWRSTATVSAAVLLLFTFVQTICAVVALR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44930			Plant protein of unknown funct...		Potri.014G054100 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	1.41	0.9136
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022250 [exp]	2.00	0.8897
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G247200 [exp]	2.23	0.8735
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	4.89	0.8741
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	9.79	0.8603
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	9.94	0.8671
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.014G102700 [exp]	10.00	0.8657	Pt-CYP78.2
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	11.48	0.8625
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.010G173300 [exp]	14.96	0.8531	ZIP1.1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.017G124600 [exp]	18.49	0.8518	Pt-HBGGPPS2.1

Compare expression of checked genes

Potri.014G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.