Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28580 239 / 5e-73 Plant protein of unknown function (DUF247) (.1) AT2G44930 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) AT4G31980 206 / 3e-59 unknown protein AT3G50170 189 / 3e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 188 / 4e-54 Plant protein of unknown function (DUF247) (.1) AT1G67150 186 / 4e-54 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50150 182 / 1e-51 Plant protein of unknown function (DUF247) (.1) AT3G50120 181 / 5e-51 Plant protein of unknown function (DUF247) (.1) AT3G50140 177 / 2e-49 Plant protein of unknown function (DUF247) (.1) AT2G36430 167 / 1e-46 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G019400 [exp] 346 / 2e-115 AT2G44930 240 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.017G019700 [exp] 332 / 5e-110 AT2G44930 220 / 6e-66 Plant protein of unknown function (DUF247) (.1) Potri.017G024300 [exp] 320 / 3e-105 AT2G44930 214 / 9e-64 Plant protein of unknown function (DUF247) (.1) Potri.017G024866 [exp] 318 / 8e-104 AT2G44930 211 / 6e-62 Plant protein of unknown function (DUF247) (.1) Potri.007G132300 [exp] 315 / 7e-103 AT2G28580 221 / 1e-65 Plant protein of unknown function (DUF247) (.1) Potri.017G019300 [exp] 310 / 2e-101 AT2G44930 219 / 8e-66 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 253 / 2e-79 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) Potri.012G035001 [exp] 233 / 2e-71 AT2G44930 164 / 4e-45 Plant protein of unknown function (DUF247) (.1) Potri.012G035100 [exp] 231 / 4e-71 AT2G44930 164 / 3e-45 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 190 / 2e-55 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 182 / 3e-52 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 182 / 2e-51 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 171 / 1e-47 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 168 / 6e-47 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 165 / 6e-46 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 164 / 3e-45 AT4G31980 251 / 5e-76 unknown protein Lus10004516 [exp] 162 / 1e-44 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 160 / 6e-44 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 157 / 1e-42 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.014G054200.3 pacid=42762673 polypeptide=Potri.014G054200.3.p locus=Potri.014G054200 ID=Potri.014G054200.3.v4.1 annot-version=v4.1 ATGGAAAACGATATTAATTCCCCAAGTGCTTCAAATAAGGATATTGGCATGGCAACACGTTCAAATAATGAAAACAGGATTGATAAGGCAAGTGCTTCAA ACACGGGAAAGGAGATTGAAGCGGCAAGTGCTTCAAATGTTTTGAAAGATCTAGCAGATGGGATAGCAAGGTTCAAACCTGGAAAATGTCCTGAGCACTG TATCTACGAGGTACCCCGCTCACTTCGAAGCATAGAACCGAAAGCCTACACTCCACAAGTAGTTTCACTAGGCCCTGCTCACTGTGGCCATGAGGAACTA GTGTCAATGGAGAAGCAGAAATTGAGATATTTAGCAGAATTCATGGATGGGAAGAAGGTGACATTGGACGATCTTGTGACCATAGTTCAGAAGAATGAAA TGGAAATTCGAGGCTGTTATAACTTCAATCGTAGCAGTGATGATTTTGTAAAGATGATTCTGTTGGATGCTGTATTCGTCATCGAATTCTTGTTGCAGTT CTTTAACCTTTTCTGTGAAGAAGTTCCTATATTACCTGAGCCTCGGATGGTGTTTGGTTTACAAGTGGACTTGATACTACTTGAAAATCAGCTACCTTAT TTCATTCTGGAGAAAATATACGAGAAAACCTATTCAGACCCTGAAACACAAGCTAGCCTTACTTTTCCTGAGCTTGTAGCCTTCTACTTTGGACATTACT ACAGGATTTCAGAGAGACCAAAAGTCAACTCAGTAGGGATAAAGCATTTCACTGATTTTCTGAGATATGTTATGTTGAACGAGTCCCTGGAGACATTACC TCGTCGTCCTTGTACCATCAAACTGAAATACAGTGCAACCATGCTTCATAGAGCAGGATTGAAGTTTGAGGCAACTGAAAACAGTTGTGTACTCGACATA AATTTTGTCAACGGAGTGTTGAAAATGCCACGCTTTGAAGTAAATCAGAGCTTCGAATATGTGACACGAAACCTCATGGCATATGAGCAGTGCCACTACC CATATAGCACTTACATATGCAATTACTTTATGTTAATGGACCATCTTATCAACACCGAAGAAGATGTGGATTTGCTGGTTAAAGTGGGGGTGATTGATAA CTGGCTAGGAAACAATGCCATGGTTGCAGATTTGATTAACCGGCTTTGCGAGCAAATTAGTGAGTTTTTCACTTGTTATCATGATCTTTGTGTTGATTTG AACGCCTACTATGAGAACAGGTGCAACCATAGAAAGGCAACCTTGAAACTTGTATATTTCAGCAATCTTTGGAGAGGTACCGGAACTGTTGCTGCAGCTG TCCTGCTGATCCTCACTTTGATACAGACTGTATGTTCAATAATGTCACTTCTAGGTCCAAAGCAGCTGATCTAG
AA sequence Show only first row Show all	>Potri.014G054200.3 pacid=42762673 polypeptide=Potri.014G054200.3.p locus=Potri.014G054200 ID=Potri.014G054200.3.v4.1 annot-version=v4.1 MENDINSPSASNKDIGMATRSNNENRIDKASASNTGKEIEAASASNVLKDLADGIARFKPGKCPEHCIYEVPRSLRSIEPKAYTPQVVSLGPAHCGHEEL VSMEKQKLRYLAEFMDGKKVTLDDLVTIVQKNEMEIRGCYNFNRSSDDFVKMILLDAVFVIEFLLQFFNLFCEEVPILPEPRMVFGLQVDLILLENQLPY FILEKIYEKTYSDPETQASLTFPELVAFYFGHYYRISERPKVNSVGIKHFTDFLRYVMLNESLETLPRRPCTIKLKYSATMLHRAGLKFEATENSCVLDI NFVNGVLKMPRFEVNQSFEYVTRNLMAYEQCHYPYSTYICNYFMLMDHLINTEEDVDLLVKVGVIDNWLGNNAMVADLINRLCEQISEFFTCYHDLCVDL NAYYENRCNHRKATLKLVYFSNLWRGTGTVAAAVLLILTLIQTVCSIMSLLGPKQLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28580			Plant protein of unknown funct...		Potri.014G054200 [exp]	0	1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Potri.014G169600 [exp]	14.86	0.7640
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	16.24	0.7281
AT1G18340			basal transcription factor com...		Potri.005G176600 [exp]	35.07	0.7082
AT5G23760			Copper transport protein famil...		Potri.012G141500 [exp]	38.36	0.6508
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	43.81	0.6841
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072691 [exp]	43.95	0.6985
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	44.15	0.6979
AT1G34270			Exostosin family protein (.1)		Potri.019G086800 [exp]	46.36	0.7013
AT2G24960			unknown protein		Potri.017G120900 [exp]	50.75	0.6776
AT5G45470			Protein of unknown function (D...		Potri.015G107400 [exp]	63.68	0.6787

Compare expression of checked genes

Potri.014G054200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.