Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00026 286 / 7e-97 SD3 SEGREGATION DISTORTION 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140700 [exp] 536 / 0 AT4G00026 291 / 7e-99 SEGREGATION DISTORTION 3, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042893 [exp] 306 / 3e-104 AT4G00026 275 / 2e-92 SEGREGATION DISTORTION 3, unknown protein Lus10028190 [exp] 305 / 3e-102 AT4G00026 275 / 5e-91 SEGREGATION DISTORTION 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0455 [poplar] [flax] MIM-OM_import PF08294 [poplar] [flax] TIM21 TIM21
Representative CDS sequence Show only first row Show all	>Potri.014G054400.1 pacid=42762533 polypeptide=Potri.014G054400.1.p locus=Potri.014G054400 ID=Potri.014G054400.1.v4.1 annot-version=v4.1 ATGCAACATATTAGGAGATGCAGCGGTTTTTTGAGATCTCAAAATGGGCTGCCTTTATTTTTGGAGAGAAAGATTGTTAAGGGAGTATCTGATGTGGGTT TGGCGTCCTTTTCAACATCCATGGCTGCACAAAGAAGTGCACTTGGTAATTCAGCCACTAGGCTGCCAAAGTCAGATTATGTGAGACATTTTGCTTCCAA TGCCAACCATTTGACTAAGGACATACTTCGGGGTAATGGTATCCCTGCTATGTATGGAGGTAAATCTAACAGAGAATGCCTGGTTAGCCTTAGGTCACCC TTTCAAATCATGGAAAACCATGGAGGAAGCACCATTAATATTTGTGTTGCTAGATCCTTTGCATCGAAAGCTTCGAAGAAAGAGACACGAAATCAATCTG AGACCAGAAAAGATTTATCTACTGTCGAGGATCCTTTTGATGCTCCAACATACAATATCCCAGAGAAGCCTGTGACGTTTACAGAGGGTGCTTCCTACAG CATTATAATTCTTGCAGGACTTGGTGTTGCTGCTGCTGCAGCTTATGCTGTTTTCAAGGAGCTGATATTTGAACCAAAAGAATACAAGATTTTTAACAAG GCTCTGAAAAGGATTCAAGATGACAGTCAGGTCAGGGTGAGGATTGGATCCCCTATTACAGGTTATGGTCAGGAAAGTAGAAATCGTGCTGCTCGCCAAC GTATTCCCAATAGGATCTTTACTGATGAAGATGGTGTGGAGCATGTCCAGATTAATTTCTATATTCGTGGGCCGCATGGTGCTGGGAAGGTTTCTGCTGA GATGTTCAAAGACAAAGTGGACAAGCAGTGGAAGTATACATACTTAATTGTCGAGACCATGCAACCTTCACGATCACAGTTGATTCTGGAGTCTTATATG CCTGCGCCAGTGGTTGCGTAA
AA sequence Show only first row Show all	>Potri.014G054400.1 pacid=42762533 polypeptide=Potri.014G054400.1.p locus=Potri.014G054400 ID=Potri.014G054400.1.v4.1 annot-version=v4.1 MQHIRRCSGFLRSQNGLPLFLERKIVKGVSDVGLASFSTSMAAQRSALGNSATRLPKSDYVRHFASNANHLTKDILRGNGIPAMYGGKSNRECLVSLRSP FQIMENHGGSTINICVARSFASKASKKETRNQSETRKDLSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLGVAAAAAYAVFKELIFEPKEYKIFNK ALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLIVETMQPSRSQLILESYM PAPVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.014G054400 [exp]	0	1
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	7.74	0.7204
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	12.84	0.7505
AT5G18920			Cox19-like CHCH family protein...		Potri.010G028000 [exp]	13.85	0.7249
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	18.33	0.6634
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.001G280600 [exp]	19.07	0.6296	Pt-ATUBA1.5
AT5G17070			unknown protein		Potri.019G052400 [exp]	20.17	0.6765
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	22.44	0.6934
AT5G21060			Glyceraldehyde-3-phosphate deh...		Potri.004G196200 [exp]	24.41	0.7126
AT3G07590			Small nuclear ribonucleoprotei...		Potri.002G054800 [exp]	26.32	0.7034
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.002G036000 [exp]	28.72	0.5720

Compare expression of checked genes

Potri.014G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.