Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60460 265 / 3e-88 MYB DUO1 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) AT4G26930 138 / 7e-38 MYB ATMYB97 myb domain protein 97 (.1) AT5G06100 138 / 1e-37 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT3G11440 136 / 2e-36 MYB AtMYB65 myb domain protein 65 (.1) AT2G32460 135 / 4e-36 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT2G26960 134 / 5e-36 MYB ATMYB81 myb domain protein 81 (.1) AT5G55020 134 / 1e-35 MYB ATMYB120 myb domain protein 120 (.1) AT5G65230 130 / 1e-35 MYB ATMYB53 myb domain protein 53 (.1) AT3G27810 127 / 2e-35 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G26660 130 / 5e-35 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G140900 [exp] 477 / 1e-171 AT3G60460 226 / 1e-72 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Potri.013G130900 [exp] 141 / 1e-37 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.003G189700 [exp] 139 / 2e-37 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 139 / 4e-37 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 136 / 2e-36 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.008G081600 [exp] 133 / 2e-36 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.010G174500 [exp] 133 / 3e-36 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.001G224500 [exp] 135 / 5e-36 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 134 / 9e-36 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009780 [exp] 246 / 1e-80 AT3G60460 258 / 2e-85 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Lus10040063 [exp] 137 / 9e-37 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026142 [exp] 138 / 4e-36 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10021539 [exp] 136 / 8e-36 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10008685 [exp] 136 / 1e-35 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10027189 [exp] 135 / 1e-35 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 133 / 5e-35 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10036103 [exp] 132 / 7e-35 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10032129 [exp] 125 / 7e-35 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10005886 [exp] 126 / 1e-34 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G054700.1 pacid=42763997 polypeptide=Potri.014G054700.1.p locus=Potri.014G054700 ID=Potri.014G054700.1.v4.1 annot-version=v4.1 ATGGAAGGATTTAAGAAAGAAGAAATAAGAAAAGGGCCATGGAAAGAGGAAGAAGATGAAGTACTGATTAACCATGTTAAAAAATATGGTCCCAGAGATT GGAGCTCCATTCGATCCAAAGGCCTTTTACATAGAACTGGCAAGTCTTGTCGTCTTCGCTGGGTTAATAAGCTTAGACCCAACTTGAAAAATGGGTGCAA GTTTTCAGCAGAGGAAGAGAGGGTGGTTATAGATTTGCAGGCAGAAATTGGGAACAGATGGGCAAGAATCGCTACGTATTTGCCGGGAAGGACTGATAAT GATGTGAAGAATTTCTGGAGTAGTAGACAGAAGAGGTTGGCTAGGATTTTGCAGACTTCAGGAACACCACCTTCCTCTTTTAATTCCAAACAACAGAGGA GTAAAAATAAAGTTCCTGTCTTTCTGGATGTTCCCACATTCGAGGCTCCAATGTTCAGTTCTTCAATGGAGGAAGAGGTATCCTCAAAGGCTTGCTCATC ATCCTACTTGGAGAACCCTGAACAGATAAGAATGATGCCATTACCGCCATTGGTTAAATCTGAGTTGCCAGGCTGTGATGCAAATCTTGTTCAATACGAG CCTATGTCTGGAATTCCCTTTCCTCAAATCCCACAGCCCCAGCCAGACCTAGTATTCTCCCCAGAAAGCCATGAACTCCTGGCTAGGCTGGATGACCCTT ACTTTCTCAATGTGCTTGGAACAATAGACGCTCCTGAACTCGGAGATACAGCACAATTTTCACTTGGGCCTCCATTGTTTGATCCAGTATCAAGTTGTAT GAATAGTCCAAGTGATGTAAAAAATCCTGTGACCCCAGATACCCTCTTCGATGAGTTGCCACCGGACATGTTTGATCATATTGAGCCGTTTCCAAGTCCT TCAGAGTGGTGA
AA sequence Show only first row Show all	>Potri.014G054700.1 pacid=42763997 polypeptide=Potri.014G054700.1.p locus=Potri.014G054700 ID=Potri.014G054700.1.v4.1 annot-version=v4.1 MEGFKKEEIRKGPWKEEEDEVLINHVKKYGPRDWSSIRSKGLLHRTGKSCRLRWVNKLRPNLKNGCKFSAEEERVVIDLQAEIGNRWARIATYLPGRTDN DVKNFWSSRQKRLARILQTSGTPPSSFNSKQQRSKNKVPVFLDVPTFEAPMFSSSMEEEVSSKACSSSYLENPEQIRMMPLPPLVKSELPGCDANLVQYE PMSGIPFPQIPQPQPDLVFSPESHELLARLDDPYFLNVLGTIDAPELGDTAQFSLGPPLFDPVSSCMNSPSDVKNPVTPDTLFDELPPDMFDHIEPFPSP SEW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Potri.014G054700 [exp]	0	1
AT5G09280			Pectin lyase-like superfamily ...		Potri.003G218200 [exp]	10.58	0.5324
AT1G43760			DNAse I-like superfamily prote...		Potri.014G186866 [exp]	25.29	0.5270
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.007G138400 [exp]	34.00	0.4952
AT5G10820			Major facilitator superfamily ...		Potri.018G017400 [exp]	36.08	0.4838
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	39.23	0.4881	Pt-PNFT3.4
					Potri.002G025701 [exp]	54.49	0.4609
AT2G26450			Plant invertase/pectin methyle...		Potri.018G051200 [exp]	57.13	0.4577
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	63.24	0.4954	ABI3.1
AT3G62840			Small nuclear ribonucleoprotei...		Potri.014G045700 [exp]	70.22	0.4932
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Potri.002G152025 [exp]	72.82	0.4422

Compare expression of checked genes

Potri.014G054700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.