Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60450 326 / 3e-112 Phosphoglycerate mutase family protein (.1) AT3G60440 296 / 4e-100 Phosphoglycerate mutase family protein (.1) AT3G60420 274 / 4e-92 Phosphoglycerate mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141000 [exp] 452 / 7e-162 AT3G60450 338 / 9e-118 Phosphoglycerate mutase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024765 [exp] 316 / 1e-108 AT3G60450 270 / 2e-91 Phosphoglycerate mutase family protein (.1) Lus10009779 [exp] 279 / 2e-94 AT3G60450 234 / 9e-78 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [poplar] [flax] His_phosphatase PF00300 [poplar] [flax] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Potri.014G054800.3 pacid=42763749 polypeptide=Potri.014G054800.3.p locus=Potri.014G054800 ID=Potri.014G054800.3.v4.1 annot-version=v4.1 ATGTTCTTACGCTACATGTTCTTCTTCCACGAAACACACTTAAAAGAACGTTTTCTCGTTCCTCTGTCTATATATAACACATTTCCTCTTAAACCTCCAC ACTCCGAGCTCACGTCCACAAAAACAACAATGGACCCTACCTCACCTGAAAATAACGATGTTAAACACCAGCAAAACGTTGTCGTCATGAGACACGGTGA CCGAATCGATAACTTCGAGCCATCATGGATCACAACTGCCACTAGACCATGGGACCCACCTCTTGTAGAAGCGGGTCGGTTAAGAGCTTTTCGTACGGGT CGGAAACTTAAAACCAATCTTGGCTTCCCAATCCATCGGGTCTTTGTTTCTCCTTTCCTCCGTTGTATCCAGACCGCCTCCGAGGTTGTCTCCGTCCTCT GCGCAGTCAACGATGGGCCTGACATTTTTAGTAGCCACGGTGTCGCCATCGATCCCTCTAAACTCAAGGTCTCTATTGAGTATGGTTTGTGTGAGATGTT GAATAGGGAAGCCATTAGGCGTGTTTCCGTGCCCAAAGATGGGAACTTTGGATTCAATATCGCAGAGCTTCAAGCCTTGCTACCAGCGGGGACAGTGGAT CGTGCTGTGAAACCAGTGTATGAAGAGCTGCCACAATGGGAAGAGACTGTGATGGGTGCAAGGACTAGATATGAACGAGTTATTAAGACGCTCGCAGATA AATACCCTTCAGAAAACTTGCTGCTTGTCACACACGGGGAAGGAGTAGGAGTTTCAGTTTCTGCATTTTTGGAAGACATAACAGTTGATGCTGTAGAGTA CTGTGCATATTCGCAACTAAGAAGACGTGTTTTCCACAAAAACAAGTCATTTACTGCTGGAGAGTTTGAGGTGCTTACTCATAATGGTAGAACCGGCATT GGTTACAAAATCCCTGTGGCCAACGGTGCCATGGATGATGCTATGTGA
AA sequence Show only first row Show all	>Potri.014G054800.3 pacid=42763749 polypeptide=Potri.014G054800.3.p locus=Potri.014G054800 ID=Potri.014G054800.3.v4.1 annot-version=v4.1 MFLRYMFFFHETHLKERFLVPLSIYNTFPLKPPHSELTSTKTTMDPTSPENNDVKHQQNVVVMRHGDRIDNFEPSWITTATRPWDPPLVEAGRLRAFRTG RKLKTNLGFPIHRVFVSPFLRCIQTASEVVSVLCAVNDGPDIFSSHGVAIDPSKLKVSIEYGLCEMLNREAIRRVSVPKDGNFGFNIAELQALLPAGTVD RAVKPVYEELPQWEETVMGARTRYERVIKTLADKYPSENLLLVTHGEGVGVSVSAFLEDITVDAVEYCAYSQLRRRVFHKNKSFTAGEFEVLTHNGRTGI GYKIPVANGAMDDAM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60450			Phosphoglycerate mutase family...		Potri.014G054800 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.005G173400 [exp]	2.44	0.8360
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.018G138000 [exp]	10.58	0.7028	MET1.1
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	11.61	0.7630
AT2G26470			unknown protein		Potri.002G250400 [exp]	17.49	0.7783
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Potri.012G060000 [exp]	26.85	0.7255	Pt-MSH2.1
AT5G10980			Histone superfamily protein (....		Potri.002G100200 [exp]	27.74	0.6541
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.010G136900 [exp]	36.37	0.6452
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	37.30	0.6873
AT2G32235			unknown protein		Potri.018G147100 [exp]	39.64	0.7256
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Potri.010G012800 [exp]	40.69	0.6747	PRL1.1

Compare expression of checked genes

Potri.014G054800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.