Plant FIBer expression Database

Potri.014G055100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58610 340 / 9e-115 ketol-acid reductoisomerase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G052700
[exp]
379 / 5e-130 AT3G58610 989 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.004G043700
[exp]
372 / 4e-127 AT3G58610 981 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089532
[exp]
181 / 5e-55 AT3G58610 164 / 2e-45 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089366
[exp]
80 / 2e-19 AT3G58610 154 / 7e-46 ketol-acid reductoisomerase (.1.2.3)
Potri.013G117532
[exp]
39 / 0.0008 AT3G58610 0 / 1 ketol-acid reductoisomerase (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011918
[exp]
328 / 3e-110 AT3G58610 980 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Lus10022849
[exp]
327 / 2e-109 AT3G58610 978 / 0.0 ketol-acid reductoisomerase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF07991 IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence
>Potri.014G055100.2 pacid=42764155 polypeptide=Potri.014G055100.2.p locus=Potri.014G055100 ID=Potri.014G055100.2.v4.1 annot-version=v4.1
ATGGTCTCGTCGGTTCCCAGCGTGAAACCCATGATCTCTCTTGATTTTGAGACCTCTGTGCTTAAGAAGGAGAAGGTCTCTCTTGCTGGTCACGATGAGT
ACATTGTAAGAGGAGGGAGGGATTTGTTCCACTTTCTGCCTGATGCATTTAAGGGGATTAAGCAGATTGGCGTTATCGGTTGGGGTTCCCAGGGTCCTGC
TCAACCTCATAATCTGAGGGATTCTCTTGCTGAAGCAAAGTCTGATATTAAAGTCAAGATTGGACTGAGGAAGGGCTCTCGTTCTTTTTCTGAAGCTCGG
GGTGCTGGTCTTACAAAAGAGAATGGGACTTTAGGTGATATATGGGAAACCGTTAATTCTGGCAGCGATCTAGTATTGCTACTGATTTCTGATGCTGCAC
AGGCAGATAACTATGAGAAAGTCTTCTCCCACATGAAGCCAAACAGCATTCTTGGGTTTTCCCATGGATTTCTTCTTGGGCATTTGCAGTCAACGGGACT
TGATTTTCCGAAGAACATCAGTGTTATTGCTGTGTGCCCCAAGGGAATGGGTCCTTCTGTGAGGAGACTCCATATTGTTCAAGGCAAAGAGGTCAATGGT
GCTGGAATTAATTCCAGTTTCGCAGTCCACCAGGATGTTGATATGGTAGAGCCACTGACGTTGCCTTGGGATGGTCCGCTGCCCTTGGTTCACCTTTCAC
ATTTGCCACTACACTAG
AA sequence
>Potri.014G055100.2 pacid=42764155 polypeptide=Potri.014G055100.2.p locus=Potri.014G055100 ID=Potri.014G055100.2.v4.1 annot-version=v4.1
MVSSVPSVKPMISLDFETSVLKKEKVSLAGHDEYIVRGGRDLFHFLPDAFKGIKQIGVIGWGSQGPAQPHNLRDSLAEAKSDIKVKIGLRKGSRSFSEAR
GAGLTKENGTLGDIWETVNSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGFSHGFLLGHLQSTGLDFPKNISVIAVCPKGMGPSVRRLHIVQGKEVNG
AGINSSFAVHQDVDMVEPLTLPWDGPLPLVHLSHLPLH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G58610 ketol-acid reductoisomerase (.... Potri.014G055100
[exp]
0 1
AT2G41620 Nucleoporin interacting compon... Potri.015G026200
[exp]
2.64 0.8646
AT5G42480 ARC6 ACCUMULATION AND REPLICATION O... Potri.002G027501
[exp]
3.74 0.8380
AT5G09500 Ribosomal protein S19 family p... Potri.004G074201
[exp]
4.47 0.8342
AT5G37830 OXP1 oxoprolinase 1 (.1) Potri.017G124400
[exp]
12.32 0.8220
AT1G52630 O-fucosyltransferase family pr... Potri.001G171500
[exp]
15.90 0.8164
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Potri.003G120400
[exp]
18.43 0.7844
AT5G25800 Polynucleotidyl transferase, r... Potri.002G073300
[exp]
18.65 0.8243
Potri.005G038600
[exp]
22.13 0.8120
AT5G52840 NADH-ubiquinone oxidoreductase... Potri.017G149100
[exp]
23.06 0.8237
AT3G55280 RPL23A2, RPL23A... RIBOSOMAL PROTEIN L23A2, ribos... Potri.006G213300
[exp]
24.91 0.8351

Potri.014G055100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.