Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 251 / 3e-81 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 246 / 4e-79 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 77 / 6e-16 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20550 72 / 4e-14 HSP40/DnaJ peptide-binding protein (.1.2) AT5G01390 72 / 5e-14 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 71 / 1e-13 DNAJ heat shock family protein (.1) AT3G47940 68 / 1e-12 DNAJ heat shock family protein (.1) AT5G25530 67 / 2e-12 DNAJ heat shock family protein (.1) AT4G28480 66 / 3e-12 DNAJ heat shock family protein (.1.2) AT1G59725 65 / 9e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141100 [exp] 323 / 4e-109 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 254 / 5e-82 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 251 / 3e-81 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 251 / 5e-81 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.001G215132 [exp] 92 / 3e-22 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.017G016000 [exp] 76 / 2e-15 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 75 / 3e-15 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G136266 [exp] 71 / 3e-15 AT2G20560 172 / 3e-54 DNAJ heat shock family protein (.1) Potri.007G136600 [exp] 73 / 6e-15 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028188 [exp] 281 / 2e-92 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 279 / 1e-91 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 250 / 8e-81 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 164 / 2e-48 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 163 / 3e-48 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 154 / 1e-44 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10003651 [exp] 80 / 1e-16 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 76 / 2e-15 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 73 / 3e-14 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 71 / 2e-13 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G055300.2 pacid=42763016 polypeptide=Potri.014G055275.1.p locus=Potri.014G055300 ID=Potri.014G055300.2.v4.1 annot-version=v4.1 ATGGGAGGAGGTGGTGGTGGTCATAGTCCATTTGATCTTTTTAAATCATTTTTTAGCAGAGGTGGTTTTGGCGGTGGTGGCAGCTCAATAGGAAGAAGGC TGAAGCAAGGTGAAGATAGAGTGCACTCTCTGAGGGTTTCCTTAGAGGACTCGTACAATGGAACATCCATGAAACTCTCTAGAAACATTTTGTGTGCCAA ATGTAAAGGGAAAGGTTCAAAGAGTGGAGCCTCTGGTACATGTCATGGCTGCCAAGATTCCGGAATGAAAGTTCCAATTCAACAGATCGGATTGGGCATG GTCCAACAAATGCAGCAGCATGTGTGCCCTGAATGCAGAGGTTCAGGTGAGCTCATTAGTGAGAAGGATAAATGCCCCCTATGCAGAGGGAACAAGGTGA CACAAGAAAAGATGATTTTAGTTTTTAAGAGTTCCCAAGAACCAGCATTCTTGAGGTTTTTGTTTTCTGTTCCTGCTAACTGCCTGACTCAATTACAAGG GGATGTTGTTGCTGTACTGCAATTGAAAGAGCACCCCAATTTTGAACGGAAATTGGATGATCTCTATGTGAAACGCACTATCAATTTAACAGAGGCTCTT TGTGGGTATCAGTTTTCCCTTACTCATCTTGATGGTCGGCAGCTTCTTATCAAATCAAATCCTGGCAAGATCATAAAACCTGGTCAGAACAAAGCAATTA ATGATGAAGGAATGCCACATTATCTCAGGCCCTTCATGAAGGGCAAGCTTTATATCCGTTTTAATGTGGAGTTCCCTGACTCTGGGAGTCTATCCCCTCA GCAGTGCGAAGAGACAATAATGCATGATGTCAATATGGAGGAGGAGAAAAGGCACAAACAGCAGCAGCACCAGCAGCAGGAGGCATATGATGAGGATGAA GAACCATCCACGTCCTGA
AA sequence Show only first row Show all	>Potri.014G055300.2 pacid=42763016 polypeptide=Potri.014G055275.1.p locus=Potri.014G055300 ID=Potri.014G055300.2.v4.1 annot-version=v4.1 MGGGGGGHSPFDLFKSFFSRGGFGGGGSSIGRRLKQGEDRVHSLRVSLEDSYNGTSMKLSRNILCAKCKGKGSKSGASGTCHGCQDSGMKVPIQQIGLGM VQQMQQHVCPECRGSGELISEKDKCPLCRGNKVTQEKMILVFKSSQEPAFLRFLFSVPANCLTQLQGDVVAVLQLKEHPNFERKLDDLYVKRTINLTEAL CGYQFSLTHLDGRQLLIKSNPGKIIKPGQNKAINDEGMPHYLRPFMKGKLYIRFNVEFPDSGSLSPQQCEETIMHDVNMEEEKRHKQQQHQQQEAYDEDE EPSTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.014G055300 [exp]	0	1
AT2G02880			mucin-related (.1)		Potri.012G021000 [exp]	9.59	0.7350
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	10.67	0.8705
AT1G63860			Disease resistance protein (TI...		Potri.019G097720 [exp]	12.68	0.8609
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	13.03	0.8506
AT5G54980			Uncharacterised protein family...		Potri.008G052451 [exp]	14.38	0.8025
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	18.97	0.7725
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.002G060500 [exp]	19.89	0.7669	Pt-EXT.12
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	20.44	0.8054
AT4G02550			unknown protein		Potri.001G014200 [exp]	20.49	0.7100
AT5G17680			disease resistance protein (TI...		Potri.019G098900 [exp]	21.02	0.8307

Compare expression of checked genes

Potri.014G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.