Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44950 918 / 0 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT1G55250 417 / 7e-132 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT4G03510 59 / 2e-09 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G58030 56 / 7e-08 RING/U-box superfamily protein (.1.2.3.4) AT1G74990 51 / 2e-07 RING/U-box superfamily protein (.1) AT1G19310 52 / 3e-07 RING/U-box superfamily protein (.1) AT2G42030 54 / 4e-07 RING/U-box superfamily protein (.1) AT5G05130 52 / 1e-06 DNA/RNA helicase protein (.1) AT4G28270 50 / 2e-06 ATRMA2 RING membrane-anchor 2 (.1) AT2G23780 50 / 2e-06 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141300 [exp] 1451 / 0 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G008800 [exp] 479 / 1e-155 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.003G216651 [exp] 196 / 8e-55 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.009G023300 [exp] 61 / 4e-09 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.001G229600 [exp] 59 / 1e-08 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.006G193600 [exp] 56 / 6e-08 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 56 / 7e-08 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.006G035700 [exp] 56 / 1e-07 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.002G133000 [exp] 52 / 3e-07 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042890 [exp] 1099 / 0 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10028187 [exp] 911 / 0 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10041689 [exp] 450 / 1e-144 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10024057 [exp] 422 / 3e-134 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10018489 [exp] 56 / 3e-08 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 56 / 3e-08 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10022569 [exp] 53 / 2e-07 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10016303 [exp] 52 / 5e-07 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 52 / 5e-07 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016255 [exp] 53 / 7e-07 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.014G055800.2 pacid=42762602 polypeptide=Potri.014G055800.2.p locus=Potri.014G055800 ID=Potri.014G055800.2.v4.1 annot-version=v4.1 ATGGGGAGTACAGGTGAGCCAGACAGAAAACGGCGTCACTTCAGCTCCATATCATCACCAACAGCTGCTATGGCTAAAAAGCAGCCGTTATCGCATCTGT CCGAGGACAAAAAGCTTGATACTGCTGTTCTTCAATACCAAAATCAAAAGCTTCAACAGAAGTTAGAGGCTCAGAAGGTTGAGCATTCTGCACTTGAAAA CAAGTTCTCTCTACAGAAGGAGAAACAGAAACCATACAATTCCACATTGAAGGCTGTCAATAAGTCTTGGGAAGTGCTGGTGACTGACTTGGAAACATGT TCCAACCGCACAAGAGAGTGGATCAATGGGCAAGATGTCAAACATGTACCAACCGCGAGAGACGGGGGCTCATCTTCTCTCAAGGATGCATTTCTTAGCA GACTTATGGAAACTGGTGCAACTGAAAGTTCCTCTGCAACTAACTGCCCTGATCAGATGGAAGTGGATAGAGAAACTGCCTTTGAAAAGAATAAAAGGAT TGCACATAATTTAGTGGCTACAATCAATGGCCTTTGGTATCTGAAGGATGGATTACGTGCAGCAGTTTTGAAACAGCTTACAGAAGATGATGCTTGTAGG GAAACAATATCTAATGAATTGGAGACAGAACTTAAGAACTTGAGGTTAGGGCTAAGTGATCTTCATTTGAAGCACAAATCACTGGCAAGGGAATTGCAGA ACCATCGAGACAGTGATGCAAAAAATAAAGCTGAGCTTAAGCATCTAAAAGGTGAATTGGAGACCACAGTTGCAGAATTAAATGACAGCAACTGTAAATT GGCAACACTTAAAGCAGAGAGAAATGCAACTAAAGGGGCATTCTTCCCTGTCTTAAACATGGGAAGCAAGCATGCTGCTGGTGATCAGGTCAGGGATAAA CAAAAGGATCTTCTAGAAATGGAGTCTGCTGTCAAAGAGCTTTTAGACCAAGCTTCCTCTCGACTACTAGAAGTAAAAGATCTTCATGAAGAAAGGTTAA TAATATTACAGAAGCTATCCAATTTGCAGCACTCATTGAAGAATGTGAAGGTTATTTCTTCATCACGAGCCTACCTTTTGCTGAGAGATCAACTAGAGAA ATCAAAATCAATGGTTCTCCATTATCGTGCCTTATTTGAGAAACTACAGGTTGAGAAGGATAACCTTGTCTGGAAGGAAAGGGAATTAAATATGAAAAAT GATTTAGTTGATGTTTGTCGAAGATCTACTGCGGTTGTGGATTCTAGAGTTGCTGATTTAGGAAAGGAGATACAGAAACAGATTAACGAAAGAAACATGA TTGAGACTAATCTGGAAGAGTCATCAAGAGAACCAGGAAGAAAAGATGTGATTGCTGAATTCAAAGCATTGGTTTCTTCATTTCCTGAGGAAATGGGCTC TATGCAAAGCCAATTAAGTAACTTCAAAGAAGCTTCTTCTGATATTCATTCTTTGCGGGCTGATGTGCAGTCTCTTTCTACTGTTCTGGATAGGAAGCAG GGAAAACAGTGTGGAAGTTTGTCTTCCAGATCAACGAGCCAAATTGCTGAGATACATAAGTTGCAGTCTGTGGTCCAAGATCTGAATGAAAACATACTGG AGTTGAAACTGATTTTGGACATGTATCAACGTGAATCCACTTATTCAAGGGATGTCTTGGAAGCCAGGGATCTGGAATATAAGGCATGGGCTCAAGTTCA AAGTTTTAAATTCTCTCTTGATGAGCAAAACTTGGAATTACGAGTGAAGACAGCAAATGAAGCCGAGGCCATATCCCAGCAAAAGCTAGCGGCTGCAGAA GCTGAGATTGCTGATTTGAGACAGAAACTAGAAGCTTCTAAAATGGATATGTCTAGACTTTCTGATGTCCTAGAATCAAAAAATGAAGAAAATGAGGCCT ACTTATCTGAAATAGAGACAATTGGTCAAGCATATGATGAAATGCAAACTCAAAATCAACATCTGTTGCAGCAAGTAACGGAGAGAGATGATTATAACAT TAAGCTTGTTTTAGAGGGTGTGAGAGCAAGACAACTGCGGGATTCTCTGCTGATGGACAAACAAACCATGGAAAAGGAGATTCAGCAAGCCAATATTTCC GTTGATTTCTTTGATGTGAAAGCTGCAAGAATAGAAGATCAGTTAAAAAATTGTTCAGACCAGGTTCATAAACTTGCAGAAGATAAGTTTCAAAGGTCGG TTATGTTGGAAAATACACAAAAGAAATTGCTAGATTTGAGAAGATCATCTAATCAAGCAAGAGAGTCATTGGAGGATTCCCAATCTAGAGTTGAAAGAAG TCGAGCTGCTCTTTTGGAGGTGCAGATAGATCTAGAGAAAGAGAGATTTGACAAGAGAAGAATGGAGGAGGAATTGGAAGTTGCAAGGAGAGAGTTTTCT CGTCTTCAAGAACATACAGAAGGGTCTTCGATTGTAGAAAAGCTTCAACAGGAACTTAGAGAATACAGGGAAATAGTTAAGTGCAGTATCTGCCTTGACA GACCAAAAGAGGCTGTCATTACAAAATGCTATCATTTGTTCTGCAATCCCTGCATACAGAGAATTGTTGAAAGTCGTAACCGCAAGTGTCCAGTGTGTAG CATGAGTTTTGGGCATAATGATGTGAAGCCAGTTTACATCTGA
AA sequence Show only first row Show all	>Potri.014G055800.2 pacid=42762602 polypeptide=Potri.014G055800.2.p locus=Potri.014G055800 ID=Potri.014G055800.2.v4.1 annot-version=v4.1 MGSTGEPDRKRRHFSSISSPTAAMAKKQPLSHLSEDKKLDTAVLQYQNQKLQQKLEAQKVEHSALENKFSLQKEKQKPYNSTLKAVNKSWEVLVTDLETC SNRTREWINGQDVKHVPTARDGGSSSLKDAFLSRLMETGATESSSATNCPDQMEVDRETAFEKNKRIAHNLVATINGLWYLKDGLRAAVLKQLTEDDACR ETISNELETELKNLRLGLSDLHLKHKSLARELQNHRDSDAKNKAELKHLKGELETTVAELNDSNCKLATLKAERNATKGAFFPVLNMGSKHAAGDQVRDK QKDLLEMESAVKELLDQASSRLLEVKDLHEERLIILQKLSNLQHSLKNVKVISSSRAYLLLRDQLEKSKSMVLHYRALFEKLQVEKDNLVWKERELNMKN DLVDVCRRSTAVVDSRVADLGKEIQKQINERNMIETNLEESSREPGRKDVIAEFKALVSSFPEEMGSMQSQLSNFKEASSDIHSLRADVQSLSTVLDRKQ GKQCGSLSSRSTSQIAEIHKLQSVVQDLNENILELKLILDMYQRESTYSRDVLEARDLEYKAWAQVQSFKFSLDEQNLELRVKTANEAEAISQQKLAAAE AEIADLRQKLEASKMDMSRLSDVLESKNEENEAYLSEIETIGQAYDEMQTQNQHLLQQVTERDDYNIKLVLEGVRARQLRDSLLMDKQTMEKEIQQANIS VDFFDVKAARIEDQLKNCSDQVHKLAEDKFQRSVMLENTQKKLLDLRRSSNQARESLEDSQSRVERSRAALLEVQIDLEKERFDKRRMEEELEVARREFS RLQEHTEGSSIVEKLQQELREYREIVKCSICLDRPKEAVITKCYHLFCNPCIQRIVESRNRKCPVCSMSFGHNDVKPVYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	1.00	0.9228
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	2.44	0.8941
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	3.46	0.8939
AT3G17740			unknown protein		Potri.015G033300 [exp]	3.46	0.9030
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Potri.006G085700 [exp]	5.29	0.8721
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	5.91	0.8804
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	6.40	0.8273
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	6.48	0.8573
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	7.34	0.8703
AT4G28260			unknown protein		Potri.013G133200 [exp]	9.00	0.8384

Compare expression of checked genes

Potri.014G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.