Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02050 595 / 0 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 558 / 0 Chalcone and stilbene synthase family protein (.1) AT4G34850 503 / 4e-178 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT5G13930 261 / 3e-83 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT3G52160 56 / 4e-08 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT2G16280 56 / 4e-08 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G19440 54 / 1e-07 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 54 / 1e-07 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT1G71160 54 / 1e-07 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT4G34510 54 / 2e-07 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141400 [exp] 755 / 0 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Potri.004G167300 [exp] 504 / 2e-178 AT4G34850 637 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 500 / 3e-177 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 274 / 2e-88 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 272 / 1e-87 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 272 / 1e-87 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 272 / 1e-87 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 271 / 3e-87 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 267 / 1e-85 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039904 [exp] 604 / 0 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 595 / 0 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 498 / 2e-176 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 498 / 2e-176 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10023670 [exp] 270 / 1e-85 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 250 / 4e-79 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 246 / 3e-77 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 244 / 7e-77 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 199 / 5e-60 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 146 / 2e-41 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00195 [poplar] [flax] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G056300.2 pacid=42764745 polypeptide=Potri.014G056300.2.p locus=Potri.014G056300 ID=Potri.014G056300.2.v4.1 annot-version=v4.1 ATGCTTCTCATCCTTGACACCAACCTTTCTCCAAGATCAAGTTTAGCTCTCGTTTATATTTCCCTGCTTTGTGATGCTTCATCCATTAAATTCTCTTTGT ACCAAACTATCTTCTTCCTAAACCTGTTGAAGATGTCTAAAACGATTGGCAACGGGGCTTCAAAGCACTACGCCACACTCACTAGGCGCGCACCCACTCC AGGCAAGGCAACAATACTTGCAACAGGCAAGGCCTTCCCCAGCCAACTTGTTCCTCAGGAATGCTTGGTGGAGGGTTATATGCGTGACACCAAATGCGAT GATGCTTCCATTAAGGAGAAACTGGAGCGACTTTGTAAAACCACTACTGTGAAGACAAGATACACAGTCATGTCCAAGGAGATACTAGAAAAATACCCAG AACTTGCAACAGAGGGCTCTCCGACGATCAAGCAAAGACTCGAAATAGCAAACCCGGCAGTTGTTGAGATGGCACTGAAAGCAAGCATTGCTTGCATCAA TGAATGGGGCGGGTCGGTAAAAGATATCACCCATGTTGTCTATGTTTCTTCCAGTGAGATACGCTTACCGGGTGGTGATCTCTACCTTGCCAGTCAGCTT GGACTAAGGAATGACGTTGGCCGAGTAATGCTTTACTTCCTGGGCTGTTATGGAGGCGTCACTGGACTTAGAGTTGCCAAGGACATAGCTGAAAACAACC CAGGAAGCCGTATCTTATTAACTACTTCTGAGACAACGATTCTTGGTTTTCGCCCTCCAAACAAGGCACGCCCTTACGACCTTGTGGGGGCCGCACTCTT TGGTGATGGAGCTGCAGCTGTGATTATCGGAGCTGACCCTGTAATAGGTAAAGAGTCTCCTTTCATGGAGCTGAGCTATGCTGTTCAACAATTCTTGCCA GGTACACAGAATGTGATCGATGGACGCCTTTCTGAAGAGGGCATAAACTTCAAGCTTGGGAGGGATCTTCCTCAGAAAATTGAAGACAACATTGAGGAGT TTTGCAGGAAGCTTATGTCAAAGGCTGGTCTAACTGAGTTCAATGATTTGTTCTGGGCAGTCCATCCTGGTGGCCCAGCAATACTTAACAGGCTAGAGAG CAATCTCAAATTAAACACAGAGAAGCTGGAATGCAGCAGGAGGGCCCTAATCAACTACGGGAATGTCAGCAGTAATACCATAGTCTATGTTTTGGAATAT ATGAAGGAAGAGTTGAAGAGAGAAGGGGGGGAAGAATGGGGACTTGCCTTAGCTTTTGGACCAGGCATTACTTTTGAAGGCATCCTTCTTCGTAGCCTAT AA
AA sequence Show only first row Show all	>Potri.014G056300.2 pacid=42764745 polypeptide=Potri.014G056300.2.p locus=Potri.014G056300 ID=Potri.014G056300.2.v4.1 annot-version=v4.1 MLLILDTNLSPRSSLALVYISLLCDASSIKFSLYQTIFFLNLLKMSKTIGNGASKHYATLTRRAPTPGKATILATGKAFPSQLVPQECLVEGYMRDTKCD DASIKEKLERLCKTTTVKTRYTVMSKEILEKYPELATEGSPTIKQRLEIANPAVVEMALKASIACINEWGGSVKDITHVVYVSSSEIRLPGGDLYLASQL GLRNDVGRVMLYFLGCYGGVTGLRVAKDIAENNPGSRILLTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIIGADPVIGKESPFMELSYAVQQFLP GTQNVIDGRLSEEGINFKLGRDLPQKIEDNIEEFCRKLMSKAGLTEFNDLFWAVHPGGPAILNRLESNLKLNTEKLECSRRALINYGNVSSNTIVYVLEY MKEELKREGGEEWGLALAFGPGITFEGILLRSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.014G056300 [exp]	0	1
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	4.00	0.9892
					Potri.013G071200 [exp]	13.07	0.9857
AT3G11290			unknown protein		Potri.001G256500 [exp]	14.14	0.9863
AT5G05800			unknown protein		Potri.001G391600 [exp]	14.86	0.9796
					Potri.006G160950 [exp]	21.35	0.9770
AT5G05800			unknown protein		Potri.007G118701 [exp]	21.74	0.9806
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	21.81	0.9780
					Potri.002G011650 [exp]	24.49	0.9512
AT5G05800			unknown protein		Potri.001G402200 [exp]	25.69	0.9567
					Potri.006G174801 [exp]	26.94	0.9744

Compare expression of checked genes

Potri.014G056300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.