Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02060 885 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 368 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 228 / 2e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 223 / 2e-62 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 221 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 219 / 3e-61 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 216 / 3e-60 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62670 212 / 2e-59 RPF2 rna processing factor 2 (.1) AT4G11690 208 / 2e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 208 / 5e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077400 [exp] 374 / 1e-118 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 235 / 2e-67 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 232 / 2e-66 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 229 / 1e-65 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 228 / 1e-65 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 224 / 3e-64 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 225 / 4e-64 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G141800 [exp] 222 / 9e-64 AT2G06000 588 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.009G105600 [exp] 225 / 3e-63 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017658 [exp] 886 / 0 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034721 [exp] 388 / 7e-124 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 384 / 3e-122 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 220 / 2e-62 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013283 [exp] 217 / 5e-61 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 213 / 7e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 214 / 1e-58 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 214 / 3e-58 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 211 / 4e-58 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 209 / 8e-58 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G056400.1 pacid=42762804 polypeptide=Potri.014G056400.1.p locus=Potri.014G056400 ID=Potri.014G056400.1.v4.1 annot-version=v4.1 ATGACCCCCATTGCCAATTCTCGGACGCGGGCACTCTTTGGAAGACAATTCTTCCTCAACGTCAACTCTCAAGACCAAGCACAACTCCTCTTAGCTCTCA GGCACTACTCATCTTCCAATGGAGAACAACTGGACGCTGATAATGTTAAGGAGCCAAGAAAATCCTCAAACAAATCCAAGACAGCTAAATCAATGGCAAG ACTCATTAACTCAAAACCCTGGTCAACTGAACTTGAATCTTCTCTTTTTTCTCTTTCTCCTTCAATTTCTAAAACCACTTTCTTTCAAGCTCTTCGCTTT ATTGCTTCCCCACCAAAAGCTTTTGAATTTTTCAACTGGGCTTCAAGAAACGGGTTCGCTCATGATAGCCGATCGTATTTTATGATGCTAGACATCTTGG GTCGTAATGGAAATCTCAATATTGCTCGTAATTTTTTGTTTTCTATTGAGAGAAGGTCCAATGGGAGTGTTAAGATTGAAGATAGGTTTTGTAACACTTT GTTGAGGAGTTATGGTAATGCTGGGTTGTTTAATGAAGCTATAAAGCTGTTTAGTTTAATGAAGTCAAGTGGGGTGTCACCATCTGTCATTACATTTAAT AGTCTTTTGTTAATCTTGCTTAAAAGAGGAAGGACTAACATGGCACATAGTGTGTTTGATGAAATGTGTGGGACTTATGGGGTTACGCCGGATACATATA CTTTTAATATCTTGATTAGAGGCTTTTGTAAGAATTCGATGGTTGATGAAGGGTTTAGGTTTTTCAAGGAAATGTCAAGGTTTAATTGTGAGCCTGATGT GGTTACTTACAATACACTTGTTGATGGGTTGTGTAGGGCGGGGAAGGTCAGGATTGCACATAATGTGGTTAAAGGGATGGTTAAGAAAATGAAGGATTTG AGTCCTGATGTTGTTACTTATACTACTTTGGTTAGAGGGTATTGTATGAAACAAGAGATTGATGAGGCTCTGGTTGTTTTTGAAGAGATGGTTAGTAGAG GGTTAAAACCGAATGATATTACCTACAACACCCTTATAAAGGGTCTTTGCGAAGTGCAGAAGTTTGATAAGATCAAAGAGATTTTGGGGGGAGCTGTAGG GGGTAGAGGGTTTGTTCCGGATACTTGTACATATAACACTTTGATGAATGCACAGTGTGATGCAGGAAATTTCGATGAGGCTTTGAAGATGTTTAAGAAG ATGAAGGAGTTGAAAGTCCAACCAGATTCAGCTACATATAGTGTTTTGATCAGGAATTTGTGTCAAAGGGGGGATTTTGAGAGAGCAGAGCAATTGTTCG ACAAGCTATCTGATGAGGATATTTTGTTACGTGATGATGGCTGTACTCCTCTTGTTGCGGCTTACAATCCAATTTTTGATTTTTTATGTAAAAATGGAAA GACTCACAAGGCTGAGAGAGTGTTCAGGCAGCTAATGAAAAAGGGAACACAAGATCCTCCTTCATACAAGACCTTGATCATTGGGCACTGTAAGGAAGGT ACTTTTGAGGCTGGGTATAAGCTCCTGCTCTTTATGTTGAGAAGAGATTATGTGCCTGATTTTGAAACCTATGTGCTGCTGATTAACGGTTTCTTGCAGA AAGGTGAACCAATTCTGGCCTACAAGACTCTGGAGAGGATGCTAAAAAGTTCCTATCTACCTAAAACTTCTGTTTTCCATTCTATACTTTCAGAACTTCT GAAAAATGATTTTGCCCGTGAATCAGCTAGCTTTGTTGTACTGATGATAGACAGAAAAATTAGACAAAATATCAATCTCTCAACACATACCATGAGGTTG CTCTTTGGTAGTGAACTGCGAATTAAAGCATTCCAGATTGTTGAATTACTTTATGATAATGGATATATGGTTGACATGGAAGAATTGATTGGTTTCATTT GCCAGAATGGGAAGTTACTAGACGCACAAAAGATGTTGTCATTTTGTTTGGAGAAGGGTCACAATGTGGATATTAACGTGTGCAATGTAGTTATTGAAGG TCTGTGTAAAATGAAAAGACCTTTAGAAGCATTTGGGTTGTACTACATGCTAGTGGAGAAAAGTAATCATCAGCAGTTGAGCTGCCTAGAAGGTTTGAGA ACTGCCTTGGAGGCTGGGGGAAGATCAGAGGAAGCAAAATTTGTATCTAAGAGGATGCCCGATGAGAGGCAGCTGGCAGATCTCTGA
AA sequence Show only first row Show all	>Potri.014G056400.1 pacid=42762804 polypeptide=Potri.014G056400.1.p locus=Potri.014G056400 ID=Potri.014G056400.1.v4.1 annot-version=v4.1 MTPIANSRTRALFGRQFFLNVNSQDQAQLLLALRHYSSSNGEQLDADNVKEPRKSSNKSKTAKSMARLINSKPWSTELESSLFSLSPSISKTTFFQALRF IASPPKAFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRSNGSVKIEDRFCNTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFN SLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDL SPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKK MKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEG TFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMIDRKIRQNINLSTHTMRL LFGSELRIKAFQIVELLYDNGYMVDMEELIGFICQNGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYMLVEKSNHQQLSCLEGLR TALEAGGRSEEAKFVSKRMPDERQLADL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	0	1
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	2.00	0.8609
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	10.00	0.8314
AT5G07900			Mitochondrial transcription te...		Potri.004G222000 [exp]	11.22	0.8081
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	11.91	0.8389
AT3G33520		SUF3, ESD1, ATA...	SUPPRESSOR OF FRI 3, EARLY IN ...		Potri.018G128300 [exp]	12.16	0.7928	ARP6.1,ARP906
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	13.00	0.8130
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	14.00	0.8339
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	14.38	0.8342
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Potri.006G074300 [exp]	15.96	0.7845
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	16.94	0.8233

Compare expression of checked genes

Potri.014G056400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.