Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44980 1149 / 0 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT3G06010 336 / 6e-100 ATCHR12 Homeotic gene regulator (.1) AT3G06400 328 / 3e-97 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 327 / 7e-97 CHR17 chromatin remodeling factor17 (.1.2) AT2G13370 333 / 8e-97 CHR5 chromatin remodeling 5 (.1) AT5G19310 324 / 8e-96 Homeotic gene regulator (.1) AT5G66750 310 / 4e-93 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT4G31900 312 / 8e-91 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G25170 307 / 2e-88 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G44800 304 / 9e-87 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253400 [exp] 337 / 3e-98 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 335 / 3e-97 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.008G149900 [exp] 329 / 4e-97 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 324 / 2e-95 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.010G021400 [exp] 323 / 2e-95 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 316 / 2e-95 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G205600 [exp] 318 / 8e-94 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.007G026700 [exp] 309 / 1e-92 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G123400 [exp] 317 / 4e-91 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028186 [exp] 1115 / 0 AT2G44980 1105 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) Lus10022423 [exp] 344 / 2e-100 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10010522 [exp] 337 / 2e-100 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10034064 [exp] 333 / 5e-99 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10009711 [exp] 339 / 7e-99 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10033967 [exp] 330 / 9e-96 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10041735 [exp] 316 / 6e-95 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041019 [exp] 313 / 2e-90 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 312 / 6e-90 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10038363 [exp] 309 / 2e-88 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G056700.2 pacid=42762270 polypeptide=Potri.014G056700.2.p locus=Potri.014G056700 ID=Potri.014G056700.2.v4.1 annot-version=v4.1 ATGAATTATGAGCAGAGGCTCGCGGCAGCCACAATGATCATCGAATCGAAATCACACGGAGAAAGCGGTTATGCAACTTCGCCTTTTGACGCCACAGAAA TCGGCGTCACGGCGACGCTGAAACCTCACCAACTTGAAGGCATCTCGTGGCTTATACAGAGATATCACCTCGGTGTTAATGTTATCCTCGGAGATGAGAT GGGATTAGGGAAGACCTTGCAAGCCATCTCTTTCTTAAGTTATTTGAAGGTTCATCAGAAGTCACCTGGACCATATTTGGTGTTGTGCCCTTTAAGTGTG ACAGATGGATGGGTGTCAGAGATAGACAAATTCACCCCCAAACTGAAAGTCCTTAGGTATGTCGGTGAGAAAGAACACCAGCGCAGTTTGCGCAAGACAA TACATGAACATGTGAAAGAGAGTCCTTCATCATCCAACGTATCATTGTTGCCTTTTGATGTGCTATTGACAACATATGACATTGCATTAGTGGATCAAGA ATTTTTGTCACAGATTCCATGGCACTATGCTATAGTAGATGAAGCTCAAAGACTTAAAAATCCTAAGAGCGTTCTTTATAATGTTCTCATAGACCAGTTC CTCATGCCAAGACGGTTGTTGATGACTGGCACACCCATCCAGAATAATCTCACTGAACTTTGGGCTCTGATGCATTTTTGTATGCCTTTAGTGTTTGGAA CCCTGGATCAGTTCCTTTCCACGTTCAGGGAAGCTGCTGATGCTTCATCAGATCATGATGCAACAAAGGTCAAGCGGCAGTTCAAGACTTTAAAAAGTAT ATTGAAATCCTTCATGCTTCGAAGAACAAAATCTAGGCTTATAGAATGTGGAAACCTAGTGCTGCCATCATTGACTGAGATTACTGTGATGGCTCCACTG GTCAGCCTGCAAAAGAAAGTTTATACCTCAATATTGAGGAAGGAGCTTCCAAAACTTCTTGCGCTGTCTTCTTCAGCTTCCAATCATCAATCTCTGCAGA ATATGGTAATACAACTAAGAAAAGCATGCAGCCACCCTTACCTCTTTCCTGGTATTGAGCCTGAGCCATATGAAGAGGGTGAACACCTAGTTAAGGCCAG TGGGAAACTTATAATTTTGGACCAACTACTTGAGAAGCTACATGATTCTGGACATCGTGTGCTTCTCTTTGCTCAAATGACTCACACACTAGACATTTTA CAGGATTTTCTAGAGCTTCGAAAGTATTCATATGAGCGTCTTGATGGTTCAGTTCGAGCTGAGGAGCGTTTTGCTGCAATAAGAAGTTTTAGTGGACAGT CAGGGAGGTCTGGTTCTGAATCTGATCAAAATAGCTCTTTTGTTTTTATGATATCTACAAGAGCTGGAGGAGTTGGCTTGAATCTCGTGGCTGCAGATAC GGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTTGACAAACAGGCTTTGCAGCGAGCACACAGGATTGGTCAAATGAACCATGTCCTGTCAATAAAC TTAGTTACAAGGCATTCTGTGGAGGAGGTTATTATGCAAAGAGCAAAGAGGAAATTGCAGCTTAGCCATGATGTTGTAGGAGATGATGTCATGGAAGAGG ACAGAAAAGAAACAGGAGGAATTGAAACTGGTGATTTGCGATCTATCATATTTGGGTTACATAGGTTTGATCCTTCGGAGGTCAACAGTGAAAAATCAAA TGAATTAAATGCCTCAGAATTGAAAGCTTTGGCACAGAAAGTAATTGCTCTGCGATGTGACCAGATATTGGACAAAGATGATAGAAAGTTTGAGGTCAAT CCTATTGGTCAAGAAAAAGGACTTGATTTTGTTAGTGGAGGAGAATCTGCTCTTGCAAGCTATGATCCTGGTCTTGATGAGGCATCATATCTATCATGGG TTGAAAAATTCAAGGAAACATCACAATCAAATGAAAATCTGGTTATGGATTTGGGAAATAGAAGGAACTTGCCTGATAATAAGTATCTTAATCTTGAGGC TGCAAAGAAAAAGGCAGAGGAGAAAAAGTTGTCAAAGTGGGAGGCCCTTGGATACCATTCATTATCTGTTGGGGATCCCATCTACCCTGTAGATGGGGAT GCATTGTCAGACTCAGGTTTTGTTCATTTTGTTGTTGGGGATTGTACACATCCAGATAAGCTCTGCTCGTCTGAGCCCAGTGTCATATTCAGTTGTGTAG ATGAGTCAGGAAATTGGGGCCATGGAGGAATGTTCGATGCACTGGCCAAACTGTCTTCAAGTATCCCTGCTGCATATCAACAAGCCTCTGAATTTAGGGA CCTTCATCTTGGTGATGTCCATCTTGTAAAAATTATTGAGAATACTGATGGGCAGAACATGGAAGGTGATACTCCACGGTGGGTTGCTTTGGCTGTTGTA CAATCTTATAATCCTAGGCGCAAAGTGCCTCGTAGTGAGATCTCTATTCCTGACTTGGAGGCTTGCCTGTCCAAGGCGTCTTTTGCTGCAGCTCAAAATT CAGCCTCAATCCACATGCCTCGTATTGGTTATCAAGATGGAACAGATCGCTCACAGTGGTATACTGTTGAACGTCTTCTACGAAAATATGCTTCTGTTTT TGGAATAAAGATCCACGTGTATTATTATCGACGATCATCTTGA
AA sequence Show only first row Show all	>Potri.014G056700.2 pacid=42762270 polypeptide=Potri.014G056700.2.p locus=Potri.014G056700 ID=Potri.014G056700.2.v4.1 annot-version=v4.1 MNYEQRLAAATMIIESKSHGESGYATSPFDATEIGVTATLKPHQLEGISWLIQRYHLGVNVILGDEMGLGKTLQAISFLSYLKVHQKSPGPYLVLCPLSV TDGWVSEIDKFTPKLKVLRYVGEKEHQRSLRKTIHEHVKESPSSSNVSLLPFDVLLTTYDIALVDQEFLSQIPWHYAIVDEAQRLKNPKSVLYNVLIDQF LMPRRLLMTGTPIQNNLTELWALMHFCMPLVFGTLDQFLSTFREAADASSDHDATKVKRQFKTLKSILKSFMLRRTKSRLIECGNLVLPSLTEITVMAPL VSLQKKVYTSILRKELPKLLALSSSASNHQSLQNMVIQLRKACSHPYLFPGIEPEPYEEGEHLVKASGKLIILDQLLEKLHDSGHRVLLFAQMTHTLDIL QDFLELRKYSYERLDGSVRAEERFAAIRSFSGQSGRSGSESDQNSSFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLSIN LVTRHSVEEVIMQRAKRKLQLSHDVVGDDVMEEDRKETGGIETGDLRSIIFGLHRFDPSEVNSEKSNELNASELKALAQKVIALRCDQILDKDDRKFEVN PIGQEKGLDFVSGGESALASYDPGLDEASYLSWVEKFKETSQSNENLVMDLGNRRNLPDNKYLNLEAAKKKAEEKKLSKWEALGYHSLSVGDPIYPVDGD ALSDSGFVHFVVGDCTHPDKLCSSEPSVIFSCVDESGNWGHGGMFDALAKLSSSIPAAYQQASEFRDLHLGDVHLVKIIENTDGQNMEGDTPRWVALAVV QSYNPRRKVPRSEISIPDLEACLSKASFAAAQNSASIHMPRIGYQDGTDRSQWYTVERLLRKYASVFGIKIHVYYYRRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Potri.014G056700 [exp]	0	1
AT3G17890			unknown protein		Potri.008G145400 [exp]	2.23	0.7669
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	3.87	0.7566
					Potri.019G023500 [exp]	4.47	0.7578
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	6.32	0.7501
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038100 [exp]	9.48	0.7488
AT2G34580			unknown protein		Potri.004G132600 [exp]	20.14	0.7343
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.001G320201 [exp]	20.61	0.6788
AT1G74580			Pentatricopeptide repeat (PPR)...		Potri.010G234500 [exp]	22.09	0.7197
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.014G146300 [exp]	25.69	0.6556	SDG938
AT1G70590			F-box family protein (.1)		Potri.008G187200 [exp]	26.92	0.6700

Compare expression of checked genes

Potri.014G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.