Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44990 778 / 0 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1) AT3G24220 94 / 6e-20 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G30100 72 / 6e-13 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G63520 63 / 4e-10 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G18350 63 / 4e-10 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G19170 58 / 1e-08 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT1G78390 58 / 2e-08 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 48 / 2e-05 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT4G32810 45 / 0.0001 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043500 [exp] 78 / 7e-15 AT3G63520 243 / 7e-73 carotenoid cleavage dioxygenase 1 (.1) Potri.018G043000 [exp] 74 / 1e-13 AT3G63520 236 / 5e-70 carotenoid cleavage dioxygenase 1 (.1) Potri.006G239300 [exp] 74 / 2e-13 AT3G63520 240 / 8e-72 carotenoid cleavage dioxygenase 1 (.1) Potri.003G176300 [exp] 73 / 3e-13 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.019G093400 [exp] 72 / 4e-13 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 72 / 8e-13 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 67 / 1e-11 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 65 / 1e-10 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.006G239402 [exp] 63 / 5e-10 AT3G63520 208 / 1e-59 carotenoid cleavage dioxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021241 [exp] 822 / 0 AT2G44990 701 / 0.0 carotenoid cleavage dioxygenase 7 (.1) Lus10005653 [exp] 160 / 1e-46 AT2G44990 139 / 7e-40 carotenoid cleavage dioxygenase 7 (.1) Lus10035696 [exp] 79 / 3e-15 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 68 / 1e-11 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 67 / 2e-11 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10042829 [exp] 63 / 5e-10 AT3G63520 207 / 2e-59 carotenoid cleavage dioxygenase 1 (.1) Lus10029513 [exp] 62 / 1e-09 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10001599 [exp] 57 / 2e-08 AT4G32810 687 / 0.0 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) Lus10009513 [exp] 55 / 1e-07 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1) Lus10037286 [exp] 49 / 2e-06 AT4G19170 263 / 9e-86 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.014G056800.1 pacid=42763151 polypeptide=Potri.014G056800.1.p locus=Potri.014G056800 ID=Potri.014G056800.1.v4.1 annot-version=v4.1 ATGCAAGCAAGACCATACCATACAGCTCCCACGAGTTTCCCTTCACCGAGTAAACTCCCTCGATTTCATCGAACTCCATCGCCGGCTAAGATTAAAATAC CTAGAGTCATATCCATTTCCACCCCGGATACCGCTGATCATGCCTCAAGCCGTACATCCCTGGATACTATAGATGATCATGTGGCTGCTTTTTGGGACTA CCAATTCTTATTCGTGTCACAAAGATCAGAGACAACCGAGGCAGTAACGCTTCGAGTTGTTGATGGAGCAATCCCATCTAATTTTCCATCCGGCACGTAT TATCTAACCGGTCCAGGGCTATTTACAGATGATCATGGCTCCACGGTGCATCCTTTGGATGGTCACGGATACCTTAGGGCATTTAATATTGATGGAGTCA GTAGAGAGGTCAAGTTCATGGCTAGGTACGTAAAAACAGAGGCTCAAGTCGAGGAACACGATCCAGAGACTAACACGTGGCGGTTTACATATCGTGGTCC GTTTTCTGTGTTAAAAGGAGGCAAGAGACTTGGTAATACCAAGGTGATGAAAAATGTCGCAAATACTAGTGTGTTGAGGTGGGGTGGTAAGCTATTGTGT TTGTGGGAAGGTGGGGATCCTTATGAGATTGAACTAGGAACGTTGGATACTACTGGGAGGTTTGATATGATCAACGGACGTGATTCATCGATGGATAATA GAAGTAATGGTGGGGATACATGGGATATAGCAGCTGGATTATTGAAGCCAATTTTACATGGAGTGTTTAAAATGCCACCGAAGAGATTGTTGTCCCATTA TAAGCTCGATGCTAAAAGGAACAGACTGATCACTGCTTCATGCAATGCCGAGGACATGCTACTGCCCCGCAGTAATTTTACTTTTTATGAATATGATGAA AATTTCAAGTTGTTGCAGAGACAAGAATTCAACATTCCCGATCATTTGATGATCCATGACTGGGCATTTACAGATACTCATTACATATTATTCGCCAACC GCATTAAGCTTGATGTCATCGGATCAATGACTGCTATTTGTGGACTATCTCCGATGATATCAGCTTTGTCAGTGAATCCTAGCAAGTCTACCTCTCCCAT CTACTTGCTTCCTCGATTTCCTGAGAAATCACCCAGCAATAGAAACTGGAGAGTGCCAGTGGAAGCACCTTCAACAATGTGGCTACTACATGTTGGCAAT GCTTATGAGGCCAAAGATGTCCATGGAAATTTGCAAATTCAAATACATGCTAGCATTTGCTCCTACCAATGGTTCAATTTCCAAAAACTATTTGGATATA ATTGGAAAAATGCTAAGCTAGACCCTTCTGTTATGAACGTGAAGGAAGGTGGGGATGAGCTACTGCCCCATCTTGTTCAGGTTTCTATAAATTTGGATGC TGATGGGACCTGTCAAGAAAGCAGCGTGGAACCCTTGAATCAGTGGAGCAAGCCAGCAGATTTTCCTGTCATAAATCCTGACTTCTCTGGTAATAAAAAC AAATATGTTTATGCAGCAAGTTCTTCAGGCTCACGCCAAACATTGCCGCATTTCCCTTTCGATATGGTGGTGAAGCTAAACTTGTTAGACAAATCTATCC ATACATGGACCGTTGGTGCGAGGAGATTTATCGGGGAGCCTATATTTGTTCCAAAAGGAAGGGAAGAAGACGATGGATATCTTCTGGTAGTGGAGTATGC AGTTGCAATACAAAGGTGCTATCTTGTAATTTTGAATCCAAAGAGGATAGGGAAAGCTGATGCACTTGTAGCAAGATTAGAGGTCCCCAGGCATTTAAAT TTTCCACTTGGTTTCCATGGTTTTTGGGCCAACGGTTCTTAA
AA sequence Show only first row Show all	>Potri.014G056800.1 pacid=42763151 polypeptide=Potri.014G056800.1.p locus=Potri.014G056800 ID=Potri.014G056800.1.v4.1 annot-version=v4.1 MQARPYHTAPTSFPSPSKLPRFHRTPSPAKIKIPRVISISTPDTADHASSRTSLDTIDDHVAAFWDYQFLFVSQRSETTEAVTLRVVDGAIPSNFPSGTY YLTGPGLFTDDHGSTVHPLDGHGYLRAFNIDGVSREVKFMARYVKTEAQVEEHDPETNTWRFTYRGPFSVLKGGKRLGNTKVMKNVANTSVLRWGGKLLC LWEGGDPYEIELGTLDTTGRFDMINGRDSSMDNRSNGGDTWDIAAGLLKPILHGVFKMPPKRLLSHYKLDAKRNRLITASCNAEDMLLPRSNFTFYEYDE NFKLLQRQEFNIPDHLMIHDWAFTDTHYILFANRIKLDVIGSMTAICGLSPMISALSVNPSKSTSPIYLLPRFPEKSPSNRNWRVPVEAPSTMWLLHVGN AYEAKDVHGNLQIQIHASICSYQWFNFQKLFGYNWKNAKLDPSVMNVKEGGDELLPHLVQVSINLDADGTCQESSVEPLNQWSKPADFPVINPDFSGNKN KYVYAASSSGSRQTLPHFPFDMVVKLNLLDKSIHTWTVGARRFIGEPIFVPKGREEDDGYLLVVEYAVAIQRCYLVILNPKRIGKADALVARLEVPRHLN FPLGFHGFWANGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	0	1
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	1.41	0.8603	Pt-APL3.2
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	1.41	0.8285
AT3G50810			Uncharacterised protein family...		Potri.009G110200 [exp]	2.23	0.8182
AT1G71870			MATE efflux family protein (.1...		Potri.013G115600 [exp]	2.44	0.8249
AT4G09153		LCR36	low-molecular-weight cysteine-...		Potri.001G401800 [exp]	3.74	0.8005
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G019100 [exp]	3.87	0.7847
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.007G060300 [exp]	4.35	0.7670	Pt-ATPLDDELTAA.1
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	8.12	0.8139
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.007G100100 [exp]	8.77	0.7921
AT4G33550			Bifunctional inhibitor/lipid-t...		Potri.003G084000 [exp]	9.59	0.7537

Compare expression of checked genes

Potri.014G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.