Plant FIBer expression Database

Potri.014G057000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45000 368 / 2e-115 EMB2766 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042886
[exp]
353 / 4e-110 AT2G45000 410 / 2e-133 EMBRYO DEFECTIVE 2766, structural constituent of nuclear pore (.1)
Lus10028186
[exp]
352 / 5e-106 AT2G44980 1105 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05064 Nsp1_C Nsp1-like C-terminal region
Representative CDS sequence
>Potri.014G057000.1 pacid=42763942 polypeptide=Potri.014G057000.1.p locus=Potri.014G057000 ID=Potri.014G057000.1.v4.1 annot-version=v4.1
ATGTCAGGCTTCCCCTTCTCCTCTTCCTCTACACAATCCTCCCCTTTCTCCCCTGTCACCGGATTCTCATTCGGATCTTCCCCCGCTCCCTCCACCACCA
ATACACCCCCCTCCTTCGGCTCCAACACCTCCGCCCCTGCCACCGGATTCTCATTCGGATCTTCCTCCGCTCCCTTCACCACCACCGCACCCCCCTCCTT
CGGCTCCAACACCTCCTCCGCCCCTGCCACCGGATTCTCATTTGGATCTTCCTCCGCTCCCTCCACCACCACCGCACCCCCCTCCTTCGGCTCCAACACC
TCCTCCGCCCCTGCCACCGGATTCTCATTTGGATCTTCCTCCGCTCCCTCCACCACCACCGCACCCCCCTCCTTCGGCTTCAACACCTCCTCCGCCCCTT
CCTTGTCCTTTTCCTCCTCTAATACCTTCACCTCCGCTCCCTCTTCCACCCTGTCTGGCTCATCAGCTTCAACTTCTTCCCCATTCTCCTTTGCAACAGC
CTCATCCTCCACAAGTACAACTCCATCCCTGTTTGGCTCTCTCTCTGCCGCCTCCATTTCCCCTAATCCCTTGTTTGGCTCCGCTTCTTCTTCTACGGCA
AACGCAAGTTCCTCCTTTGGCACAACTACTTCATCATCATCAGCACCCGCCCCTTCGCCTCTGTTTGGAACAAGTACAGGCTCATCCTTGTTCGGAACAA
CTTCATCCTCGCCCTTGTTTGGCTCAACTTCCTCCACCGCAACTTCCGCTACGCCGCTGTTTGGCACAAGCTCACCCTCGCCCTTGTTTGGCTCAACTTC
CTCCACAACTACTTCCGCTTCGCCTCTGTTTGGCACAAGTTCACCCTCTCCCTTGTCTGGATCAACTTCCTCCACAACTACTTCCGCTTCGCCTCTGTTT
GGCACAAGTTCACCCTCTCCCTTGTCTGGATCAACTTCCTCCACAACTACTTCCGCTTCGCCTCTGTTTGGCACACGTTCACCCGCTCCCTTGTTTGGAT
CCACTTCCTCCACAGCTACTTCCGCTTCTCCTCTGTTCGGAACGGGTGCCTCTTCTACTCCATCCTCATTCGGTACACCTTCATCCGCATCAAGTACAGG
TTCATCGTTGTTTGGCAACTCTCTGTCCACCACAAGTTCTGCACCGTCTCTGTTTGGATCATCATCATCATCTACTGCTTCCACCACCAGCACGACTACT
AATTTGTATGGTTCTTCATCTTCTTTCTCTAATGCAAGCTCTGCTCCAAGCTTCTCTGCCGGATTTTCTTTCCCAAAAACCACTACAGCTTCAGCACCGA
CTACTGCTAGTACTGCTGCTATCGCATCCACGCCAGCTCCTTCAACGACAACTTCTTTCTCGTTTGGGACGCAGCCATCAGCGCCTTCACAACCTTCATT
ATTTGGCAACGCAGCCTCTTCGTCATCGGTGAAATCCACAACTGTATCGCCGTTGTTTTCTACAGTTACTACTACAACTGCTTCTACTCCAGCTAGTGGT
GCTACTGAAGTTACTTCTACTAGTACTAGCAGTACTACTTCGGGGTTGAGTTTGCCTGCATTTGGTATGACTCCAGGAACTACAGCTGGGACAGGTGCTG
CTGCTTCTTCTGGCTCTGCGGGGTTTTCTTTTTCAGGTTTTCCTTCTGCTACAACTAGTGTGGCTGCGTCTTCAGGGACTACTGCTAGCTCGTTTACTGG
ATTTTCATTGTCCAGCATATCACCGGCGCCTACTTCAAAATCACAAACTCAACCGGCTAGTAGTTCTGCGCCTCTACTCAGTGTCCCTGCTTCAACTGCT
GCACCTACAACAACTTCCAGCACTACTGCTCAGACATCATCGCTTGGTGTGGCTTCCACTAGTGGGACAAGTTCAAGTGTTAGCACTGCCTTAACCGCTA
CACCAAAATTGCCGTCTGAGATTACAGGGAAGACTGTTGAGGAGATCATCAAAGAGTGGAATTCTGAGCTGCAAGAGCGTACTGGGAAATTTCGGAAGCA
AGCTACTGCCATAGCTGAGTGGGATAAAAGGATCTTGCAAAATCGTGATGTTCTTCTTCGGCTGGAGATTGAAGTGGCAAAAGTGGTTGAGACCCAAGCT
AATTTGGAGCGAAAGTTGGAGTTAATTGAGACTCATCAACAGGAGGTTGACAAGGCTTTGCAAAGTATAGAAGAAGAAGCTGAACGTATTTACAAGGATG
AGCGTGGATCGCTTCTTGATGATGAAGCTGCATCGACTAGAGATGCTATGTATGAGCAGGCTGAATTTATAGAGAGGGAAATGGAACAGATGACAGAACA
GATAAAATCAGTAATTCAGACCGTCAATGCCAACCAGGGTGGTGAACTTGATGCAATTGATGGGATGACTCCATTGGACATGGTTGTCCGAATTCTCAAC
AATCAACTAAGTTCTTTAATGTGGATTGATGAGAAGGCTGAAGAGTTTTCTTCACGTATTCAAAAGCTTGCTAACCAAGGTTCTGCTGCTGATCGACAAT
TTTTGGGTTTAAAATTTTGA
AA sequence
>Potri.014G057000.1 pacid=42763942 polypeptide=Potri.014G057000.1.p locus=Potri.014G057000 ID=Potri.014G057000.1.v4.1 annot-version=v4.1
MSGFPFSSSSTQSSPFSPVTGFSFGSSPAPSTTNTPPSFGSNTSAPATGFSFGSSSAPFTTTAPPSFGSNTSSAPATGFSFGSSSAPSTTTAPPSFGSNT
SSAPATGFSFGSSSAPSTTTAPPSFGFNTSSAPSLSFSSSNTFTSAPSSTLSGSSASTSSPFSFATASSSTSTTPSLFGSLSAASISPNPLFGSASSSTA
NASSSFGTTTSSSSAPAPSPLFGTSTGSSLFGTTSSSPLFGSTSSTATSATPLFGTSSPSPLFGSTSSTTTSASPLFGTSSPSPLSGSTSSTTTSASPLF
GTSSPSPLSGSTSSTTTSASPLFGTRSPAPLFGSTSSTATSASPLFGTGASSTPSSFGTPSSASSTGSSLFGNSLSTTSSAPSLFGSSSSSTASTTSTTT
NLYGSSSSFSNASSAPSFSAGFSFPKTTTASAPTTASTAAIASTPAPSTTTSFSFGTQPSAPSQPSLFGNAASSSSVKSTTVSPLFSTVTTTTASTPASG
ATEVTSTSTSSTTSGLSLPAFGMTPGTTAGTGAAASSGSAGFSFSGFPSATTSVAASSGTTASSFTGFSLSSISPAPTSKSQTQPASSSAPLLSVPASTA
APTTTSSTTAQTSSLGVASTSGTSSSVSTALTATPKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAKVVETQA
NLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTVNANQGGELDAIDGMTPLDMVVRILN
NQLSSLMWIDEKAEEFSSRIQKLANQGSAADRQFLGLKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45000 EMB2766 EMBRYO DEFECTIVE 2766, structu... Potri.014G057000
[exp]
0 1
AT3G07660 Kinase-related protein of unkn... Potri.014G169900
[exp]
1.00 0.9234
AT1G75200 flavodoxin family protein / ra... Potri.002G260700
[exp]
1.41 0.9068
AT1G09680 Pentatricopeptide repeat (PPR)... Potri.017G131400
[exp]
5.29 0.8476
AT1G54215 proline-rich family protein (.... Potri.003G064900
[exp]
6.92 0.8279
Potri.016G080101
[exp]
8.48 0.8505
AT4G17080 Histone H3 K4-specific methylt... Potri.014G052300
[exp]
8.48 0.8095
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Potri.003G002950
[exp]
8.77 0.8510
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
9.53 0.8599
Potri.011G162912
[exp]
14.83 0.8738
AT5G22750 RAD5A, RAD5 DNA/RNA helicase protein (.1) Potri.004G189400
[exp]
17.88 0.8349

Potri.014G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.