Plant FIBer expression Database

Potri.014G057200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61490 87 / 5e-20 Uncharacterised conserved protein (UCP012943) (.1)
AT4G25170 86 / 3e-19 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
AT5G61495 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G107400
[exp]
110 / 3e-28 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Potri.001G126300
[exp]
107 / 6e-27 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Potri.011G130000
[exp]
42 / 0.0002 AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028185
[exp]
106 / 8e-26 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Lus10009018
[exp]
98 / 6e-23 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Lus10009654
[exp]
97 / 6e-23 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2)
Lus10003594
[exp]
43 / 0.0002 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1)
Lus10014803
[exp]
42 / 0.0002 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence
>Potri.014G057200.1 pacid=42763686 polypeptide=Potri.014G057200.1.p locus=Potri.014G057200 ID=Potri.014G057200.1.v4.1 annot-version=v4.1
ATGGGAGGAGGAGCCATGCATATGGACTTAATTCCTATGATTCAATTCAAACCTTCCACTTCTGCCATCCCTTCTTTGCCATCTACTTCTACTAGTCTTA
ACTTTCCTGTATCAGTTAGTGAAACTATTGCATCTCTTGGACAGTCTTGTACTGCTTCTTCTTGTTATTGTCAAAGTGGAACTTGTCCAAGAATGTTACA
GTCTGTAATACATGGAAAAGATCATGATACAAGGACGAATGGGGTGTCTCCTTATAATGTTGTTCTAGGCACTGTGCCATCACAATTGGAAGTTGAAAGC
GCCATAGCTTCCCTTCAAAATTTTTTGAGTGAGGTTTCTTCATCTGGGCAGATGTTGTTGGACTGTTGTGGTGTTAGAACATTGCTGTCTCTTGGTTATG
GAAGAGTTCGTGATGCTTTTAGATTGCTGCAAACTGATCCATCTATTAAGAGACTGGTGATTTCTCTAGCATCTGATAAGGCTGTCTGGGATGCTGTTAT
GAGCAATGAGGCAGTGAGGAAGCTGCAAGGGTCTTGCTACCCAGCTGAAGATTGTAGGAAAGAAAGCTGCGAGGAAGAATCGGACATAGCTGCTTGCGTT
TTGAGGTGGATCATGGACATCACTAAAGCCAAAATTATTGAACTCCTTGATAAATTCACACTATTAATGAATGAGGTTTTTCAACCAATTGAGAAGGAAA
AACCCGGAGAAGAAACCAATCATAATGTGGATGACAAAGTTAGATCATCACTGCTTCTCTCCATTGTGATCCTCTTGATTGTAGTTGTGGCAAGGACTCG
CGGAGCTTAA
AA sequence
>Potri.014G057200.1 pacid=42763686 polypeptide=Potri.014G057200.1.p locus=Potri.014G057200 ID=Potri.014G057200.1.v4.1 annot-version=v4.1
MGGGAMHMDLIPMIQFKPSTSAIPSLPSTSTSLNFPVSVSETIASLGQSCTASSCYCQSGTCPRMLQSVIHGKDHDTRTNGVSPYNVVLGTVPSQLEVES
AIASLQNFLSEVSSSGQMLLDCCGVRTLLSLGYGRVRDAFRLLQTDPSIKRLVISLASDKAVWDAVMSNEAVRKLQGSCYPAEDCRKESCEEESDIAACV
LRWIMDITKAKIIELLDKFTLLMNEVFQPIEKEKPGEETNHNVDDKVRSSLLLSIVILLIVVVARTRGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61490 Uncharacterised conserved prot... Potri.014G057200
[exp]
0 1
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Potri.005G209900
[exp]
3.16 0.9550
AT3G26770 NAD(P)-binding Rossmann-fold s... Potri.004G200100
[exp]
3.16 0.9396 Pt-CTS2.8
AT3G04310 unknown protein Potri.010G063300
[exp]
5.47 0.9517
AT5G52030 TraB family protein (.1.2) Potri.012G133900
[exp]
11.66 0.9506
Potri.014G179200
[exp]
12.96 0.9243
AT2G15690 Tetratricopeptide repeat (TPR)... Potri.014G038900
[exp]
13.22 0.9250
AT1G14030 Rubisco methyltransferase fami... Potri.008G090500
[exp]
13.63 0.9516 RBCMT.1
AT5G08740 NDC1 NAD(P)H dehydrogenase C1 (.1) Potri.007G098700
[exp]
14.28 0.9297
AT1G06510 unknown protein Potri.005G203100
[exp]
14.69 0.9106
AT1G71720 PDE338 PIGMENT DEFECTIVE 338, Nucleic... Potri.005G197900
[exp]
16.52 0.9378

Potri.014G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.