Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27370 137 / 3e-36 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT2G33810 125 / 7e-35 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G27360 131 / 2e-34 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 129 / 6e-34 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT2G42200 130 / 7e-34 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G69170 129 / 2e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G43270 129 / 3e-33 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G53160 119 / 8e-32 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G20980 127 / 1e-31 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G15270 118 / 1e-31 SBP SPL5 squamosa promoter binding protein-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142400 [exp] 605 / 0 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.003G172600 [exp] 143 / 7e-38 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 139 / 2e-36 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.014G057700 [exp] 134 / 1e-35 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.001G398200 [exp] 129 / 1e-35 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.016G048500 [exp] 134 / 2e-35 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.004G046700 [exp] 127 / 3e-35 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.002G142200 [exp] 130 / 1e-34 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.002G188700 [exp] 135 / 3e-34 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021614 [exp] 143 / 2e-38 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 132 / 1e-34 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10011356 [exp] 132 / 2e-34 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10028181 [exp] 131 / 2e-34 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10016275 [exp] 129 / 4e-34 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 130 / 5e-34 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 129 / 5e-33 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10005548 [exp] 122 / 1e-32 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10042882 [exp] 125 / 2e-32 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10036812 [exp] 126 / 5e-32 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.014G057800.1 pacid=42763480 polypeptide=Potri.014G057800.1.p locus=Potri.014G057800 ID=Potri.014G057800.1.v4.1 annot-version=v4.1 ATGGAAAATGGCGGGAACAAAGGTCAAGAGAATGATCATGCAAATCTTCCTTGGGAAATATGGGAGCTTAATACTTCAAGATTTGACTTGGTTAATAGTA GTAATAACACTGCTGCTGCTGCTGCCGACACATTCTTCACCACCACCGCCACTAGTGTGGTGGAGAGCGGCAGCTCCTGCACCCATCCAGAAGGCACTTC TGCACATGGGTTCTTGTTTCCTTACCAAAACAGTTGGCTTTACCACCACAGCAACAATAACAGTTATCAGCAACTCTCTCTTTATGGCGGGGATGGGTCC AACTTGCCCCCAGACCCGCACCTAATGTGCTTGAAGCTAGGCAAGCGACACTACTTTGAAAACAGTACTAGTAATAACAATCACAGCAACCACCCAGTGA GTGACCGACACGAGGTTGGTGGGTTCTCTATAGGCAAAAGAGGCAAACCCTACTACAGCGTCGGTGGTGGTGGTGGTGCTCACGACGGACCCTCCTCTTC CACGTCAGTGAATGTGCCGAGGTGTCAGGTGGAGGGGTGCCATGTGGCGTTGTTGAATGCTAAAGATTATCACAGGAGGCATAAAGTTTGTGAGATGCAC TCCAAGGCTCCTAAAGTAATTGTTCTAGGTTTGGAGCAGCGGTTCTGTCAGCAGTGTAGCAGGTTTCATGTAGTGTCAGAGTTTGATGATGCAAAGAGGA GTTGTAGGAGGAGATTGGCAGGGCACAATGAAAGAAGAAGAAAGAGCTCTCAGGATCCTGTTTCAAGGAATTCCTCTCAAGAAAAATTGATGGCTGGGAG ATTTCCATACATAGCGTCGCCGACAGGATGTGCTCTCTCTCTTCTGTCATCCAAAGCTGATTCCTGGGTTTCTCCTTCTGATCTCTCCTCAAGATCAAGT GCCGCACTACGTGAATTGATTGCAGAACACCGCACAGCCATCCTATCTAGACAGCTTGTTCTTGAAAAACACTTGCACCACCATGCCATGGAAGACCTTG GTGAGTCCCAACCTAGCTCCAATTTTCTTATAACCCATCAGCAACAAGTGCTGTCCGAGCCACACAATTGGGGCCGGTTAAACGACACCAGCACGCATGT GACTTTGGACCTCATGCAGGCTCCAAGTTCAGCATTCGGATTCTTGTCTCCCAGAGGGAAAAATAAAGAAGAGGAAGAAGAGTGTTCTGAGTTATGGAGC ACCATGGAAGGAGCCCATGTAGTTTAA
AA sequence Show only first row Show all	>Potri.014G057800.1 pacid=42763480 polypeptide=Potri.014G057800.1.p locus=Potri.014G057800 ID=Potri.014G057800.1.v4.1 annot-version=v4.1 MENGGNKGQENDHANLPWEIWELNTSRFDLVNSSNNTAAAAADTFFTTTATSVVESGSSCTHPEGTSAHGFLFPYQNSWLYHHSNNNSYQQLSLYGGDGS NLPPDPHLMCLKLGKRHYFENSTSNNNHSNHPVSDRHEVGGFSIGKRGKPYYSVGGGGGAHDGPSSSTSVNVPRCQVEGCHVALLNAKDYHRRHKVCEMH SKAPKVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRRRLAGHNERRRKSSQDPVSRNSSQEKLMAGRFPYIASPTGCALSLLSSKADSWVSPSDLSSRSS AALRELIAEHRTAILSRQLVLEKHLHHHAMEDLGESQPSSNFLITHQQQVLSEPHNWGRLNDTSTHVTLDLMQAPSSAFGFLSPRGKNKEEEEECSELWS TMEGAHVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27370	SBP	SPL10	squamosa promoter binding prot...		Potri.014G057800 [exp]	0	1
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	2.44	0.9099
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150700 [exp]	3.46	0.8915
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.005G112000 [exp]	8.48	0.8696
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.012G080400 [exp]	8.48	0.8636
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.015G034100 [exp]	8.77	0.8707
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	9.79	0.8894
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	15.09	0.8820	Pt-ACR4.2
AT3G63230			Protein of unknown function (D...		Potri.005G212500 [exp]	16.30	0.8384
AT3G30300			O-fucosyltransferase family pr...		Potri.004G113200 [exp]	21.33	0.8060
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	21.67	0.8614	ACR4.3

Compare expression of checked genes

Potri.014G057800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.