Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 177 / 2e-47 Ankyrin repeat family protein (.1) AT3G54070 174 / 1e-46 Ankyrin repeat family protein (.1) AT5G35810 164 / 7e-45 Ankyrin repeat family protein (.1) AT5G04730 150 / 2e-38 Ankyrin-repeat containing protein (.1) AT5G04690 149 / 6e-38 Ankyrin repeat family protein (.1) AT5G04700 146 / 1e-36 Ankyrin repeat family protein (.1) AT5G04680 133 / 3e-32 Ankyrin repeat family protein (.1) AT3G09550 75 / 7e-14 Ankyrin repeat family protein (.1) AT3G12360 71 / 2e-12 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT4G03500 67 / 2e-11 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058100 [exp] 899 / 0 AT3G54070 160 / 2e-42 Ankyrin repeat family protein (.1) Potri.011G019500 [exp] 479 / 8e-161 AT3G18670 105 / 2e-23 Ankyrin repeat family protein (.1) Potri.011G019200 [exp] 478 / 2e-159 AT3G18670 137 / 1e-33 Ankyrin repeat family protein (.1) Potri.004G003401 [exp] 395 / 1e-128 AT5G35810 154 / 2e-41 Ankyrin repeat family protein (.1) Potri.015G118600 [exp] 383 / 7e-124 AT3G18670 160 / 8e-42 Ankyrin repeat family protein (.1) Potri.011G019600 [exp] 339 / 2e-111 AT3G18670 137 / 4e-36 Ankyrin repeat family protein (.1) Potri.004G003600 [exp] 327 / 9e-102 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Potri.011G019750 [exp] 327 / 2e-101 AT3G18670 135 / 3e-33 Ankyrin repeat family protein (.1) Potri.011G016200 [exp] 323 / 2e-101 AT3G18670 174 / 6e-47 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014701 [exp] 233 / 3e-67 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10038357 [exp] 216 / 1e-60 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10027721 [exp] 211 / 2e-59 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10019887 [exp] 204 / 4e-56 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10014030 [exp] 201 / 4e-55 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10003282 [exp] 164 / 2e-42 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 160 / 6e-41 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1) Lus10035567 [exp] 131 / 1e-32 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10014031 [exp] 107 / 2e-27 ND 146 / 2e-42 Lus10019888 [exp] 86 / 3e-17 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.014G057950.1 pacid=42764527 polypeptide=Potri.014G057950.1.p locus=Potri.014G057950 ID=Potri.014G057950.1.v4.1 annot-version=v4.1 ATGGGAACTCCTTCAGAAATGAAGCCAGCCTACATCGCAACCTTGGAGGAAGACTGGAAGAGCCTGGCTGAATTCTATGAGAAACATAAAGATCGCCTGT TGACTCCAATGCCAGTCTCCAAAGATACTGCATTTCATATGGCTGTCTACAGTGAAGATGAGAAATTGCTCAAGTGTCTTCTTGATTACGCACAGGATGT GCCTACGTCCCAGGATCATAAACATCCCATTAGTATTACAAATGTTTATGGACACACACCACTTCATTTAGCAGCCAGCAGAGGAAACTCTGAGGCAGTA AAGCTCTTGGTGGAGGAATCAAAGAAAATCCTTGTGGGTGAATCAGAAAATGAGAAAAAAGATATAATGTTGATGAAAAACAAGTTCGGCGAGACCCCTT TGTTTAGAGCTGCTGCGTTTGGTCAGACTAAAATAGTCAAGTATTTGACTCATCAACCTGCACAAATAGTCAATGATGAGCTTTTATTAGTTCATCGCCA AAGGAATGATGGACAATCTATTCTTCATGTTGCAGTCCTAGGGGAGAATTTTGAAACTGCTGTGCTGCTGTTAGAACTTGATAAATCACTTAGCAAGTTG ACAGACAGCGGGGGGAAAACTTGTCTTGGTTTGTTGGCCGAGATACCTTCCGCTTTCAAGAGTGGACACTCTATGAGTATATTCAGCCGATACCTTTACA TGTGTCTTCCGGTTCAAGATGAGTGTGATGGGGCCATCAATGAAGAAACCCGAAGAGTTCGGGAAGATCCGGAGAGTGGCCAAAGGAGGAATATGAATAG TCGATTTAGCAACCATGTCCACGGAGTGTTAGAATGGATCAACGGATCAGTCTGCAGATTCTCCTTCAAAGGGTGGCCGATGGTGGAAAGAATCTGGGAA AATAAGAGGAAGCATAAATTTGCCTTGCGACTGGCAAAAATGCTAATAAAGAGTGATGTTTCGTGGGATCAAGTTATTGCTGTACAGGGCCTGTATGGAG CTAGCACTGGATCCCCTGTCTCTGGTCCTTCGCATCCTTTGCTTACAGCAACAAAAACAGGAATACTAGAGGTTGTTTATGAAATGCTCACAGAGCATCC CCCGTCTGTTGATCTTCTTGACAAAGAAGGGAAGAACATATTGCATGTAGCTATAATGTACAGACGCAAGGATATTTTCAATCTTATACAGAGTAACCGG ATAATATCGAATAGGATGAGCTATGGAATTGGCAAAGATGGCTACACATTGTTGCACCAAGTAGCAAACAACAAGTATTACTCTGTAGGAAGCAAGCATG GTCCTGCACTACAATTACACGAAGAGTTAAAATGGTTCACACGTGTCGAGAAGGTCATCCCTTCTTATTATGCCAAGCTCCGCGACTCTAAGCGTAAAAT GACTGCAGAGGAGCTCTTCAATTATATGCACAAAAAGCAACTCCTGGCCGCACAACAATGGGTCAAGGAAACTGCTCAGTCATGTTCAGCTGTAGCTGTT CTTGTTGCTACCATTGTCTTTGCTGCTGCCTACACTGTACCTGGTGGTTCAAATGATAAGGGCATTCCAATTTTCCTCCACAAAAACTTTTTCTTGTTTT TCACCATCATGGATGTTATCGCCTTAGCAAGCTCCTTGACCTCAGTTGTGATGTTCCTCTCTATCCTCACTTCTCCTTTTGATTACGAAGATTTTCGTAA CTCAATCCCTCGAAAATTGACTTTGGGATTCACTTTGCTCTTCTTCTCCGTGATGGCTACCATGCTTGCTTTCGCTGCCACCATTTTGCTCATCGTTCAA TCAGAGAAACAATTGACAGCAAGTTTGATTTCAATGGCCGCATTTTTTCCCGTCTCCGTGTTTGCATTGATGCAGTTCCGTTTGTTTGCTGCATTCATGC GTTCCACGAAGGGCATCCGTAAGGCAATGAGTAGGTCCCTCCCTTGGTTTGGTGCCCCTTCACTGTTTCGCAAGAGAAAGCAGCGTCGACATTTATTTCA GAAAAAGTAA
AA sequence Show only first row Show all	>Potri.014G057950.1 pacid=42764527 polypeptide=Potri.014G057950.1.p locus=Potri.014G057950 ID=Potri.014G057950.1.v4.1 annot-version=v4.1 MGTPSEMKPAYIATLEEDWKSLAEFYEKHKDRLLTPMPVSKDTAFHMAVYSEDEKLLKCLLDYAQDVPTSQDHKHPISITNVYGHTPLHLAASRGNSEAV KLLVEESKKILVGESENEKKDIMLMKNKFGETPLFRAAAFGQTKIVKYLTHQPAQIVNDELLLVHRQRNDGQSILHVAVLGENFETAVLLLELDKSLSKL TDSGGKTCLGLLAEIPSAFKSGHSMSIFSRYLYMCLPVQDECDGAINEETRRVREDPESGQRRNMNSRFSNHVHGVLEWINGSVCRFSFKGWPMVERIWE NKRKHKFALRLAKMLIKSDVSWDQVIAVQGLYGASTGSPVSGPSHPLLTATKTGILEVVYEMLTEHPPSVDLLDKEGKNILHVAIMYRRKDIFNLIQSNR IISNRMSYGIGKDGYTLLHQVANNKYYSVGSKHGPALQLHEELKWFTRVEKVIPSYYAKLRDSKRKMTAEELFNYMHKKQLLAAQQWVKETAQSCSAVAV LVATIVFAAAYTVPGGSNDKGIPIFLHKNFFLFFTIMDVIALASSLTSVVMFLSILTSPFDYEDFRNSIPRKLTLGFTLLFFSVMATMLAFAATILLIVQ SEKQLTASLISMAAFFPVSVFALMQFRLFAAFMRSTKGIRKAMSRSLPWFGAPSLFRKRKQRRHLFQKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.014G057950 [exp]	0	1
AT5G26620			unknown protein		Potri.005G002500 [exp]	3.00	0.9060
AT5G26620			unknown protein		Potri.005G002600 [exp]	6.48	0.9010
AT5G65880			unknown protein		Potri.014G006850 [exp]	7.48	0.8732
AT1G19715			Mannose-binding lectin superfa...		Potri.005G232400 [exp]	9.59	0.8628
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136600 [exp]	13.07	0.8967	CYP80D1
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G452600 [exp]	17.29	0.8752
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Potri.006G076400 [exp]	18.30	0.8872
AT3G05220			Heavy metal transport/detoxifi...		Potri.007G021200 [exp]	21.49	0.8869
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.012G105700 [exp]	25.09	0.8865
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.005G185800 [exp]	31.43	0.8697

Compare expression of checked genes

Potri.014G057950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.