Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45040 360 / 1e-123 Matrixin family protein (.1) AT4G16640 325 / 5e-110 Matrixin family protein (.1) AT1G70170 267 / 4e-87 MMP matrix metalloproteinase (.1) AT1G24140 254 / 1e-81 Matrixin family protein (.1) AT1G59970 241 / 6e-77 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157500 [exp] 394 / 5e-137 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 380 / 3e-130 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.015G103900 [exp] 290 / 8e-96 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 278 / 2e-91 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 234 / 3e-75 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.013G033200 [exp] 208 / 6e-65 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.019G073800 [exp] 204 / 1e-63 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073700 [exp] 204 / 2e-63 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.008G027600 [exp] 201 / 3e-62 AT1G59970 213 / 8e-67 Matrixin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028955 [exp] 355 / 2e-121 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 341 / 9e-116 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10004728 [exp] 337 / 2e-114 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028180 [exp] 301 / 2e-101 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10030662 [exp] 244 / 3e-78 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10042881 [exp] 180 / 5e-56 AT2G45040 180 / 1e-56 Matrixin family protein (.1) Lus10014512 [exp] 184 / 2e-55 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10010719 [exp] 183 / 6e-55 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10005605 [exp] 181 / 2e-54 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10032175 [exp] 180 / 5e-54 AT1G59970 224 / 3e-71 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF00413 [poplar] [flax] Peptidase_M10 Matrixin CL0244 [poplar] [flax] PGBD PF01471 [poplar] [flax] PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G058200.1 pacid=42762625 polypeptide=Potri.014G058200.1.p locus=Potri.014G058200 ID=Potri.014G058200.1.v4.1 annot-version=v4.1 ATGCTTCTATATTACATTTTCTCTATCCTCTTTCTCCACTACAAGACACCATGCTCTGCCGCTAGGCCAACACCTACATTAACCACCACGCCGGCAGCAG AAGTTGTAACGGTCAAAGATCCCAACTACACATGGCAGAATTTTGGGAGCTTCCTCGATGCGGGCAAAGGCAGTCATGTCAATGGAATGTCGGAGCTCAA AAGATACTTCCATCATTTTGGCTATCTCCCATCACAAGATTTGAAGAGCATAACAGATATATTCGATGACCGGTTCGAAACAGCGATTGTTCGATATCAA GCTAAACTCGGCCTTCAAACTACTGGTAAGCTCGATCTCGATACGCTAAATCAAATCATGGCACCAAGGTGTGGCGTGCCTGATGATACAATGTTTCACA AATTGCACGCATCTAGACATTACTTTTATTTTCCTGGAAAACCTCGGTGGACGCGTTCCATACCAATGACTTTGACGTACTCGTTTTCTAAAGAGAATTT GATCAACGTCTCTTTGAGTTTGTCAGATATCGAAGAAGTGTTTAAAGGTGCTTTTGCAAAATGGGGTTCAGTTATACCAGTGAGTTTTGTGGAGACAGAT GATTATGCTTTCGCCGATATTAAAATAGGGTTTTATAGTGGAGATCATGGCGATGGAGAACCATTCGATGGGGTTTTAGGAGTTTTGGCTCATTCATTCT CACCTGAAAGCGGGAGATTTCATCTTGATGCAAGGGAAACATGGGCCATTGATTTTGATTTGGAGAAGTCAAAGGTCGCTGTTCATTTGGAATCAGTGGC TGTCCATGAGATTGGTCATCTGTTAGGATTGGGCCACTCTTCTGATGAAAAGGCTGTCATGTACCCTAGTTTGAAACCTAGAAAAAAGAAGTTGGATTTG AGCGTTGATGATATACAAGGAGTGCAAGCTCTTTATGGATCCAACCCTAATTTCACACTTGGGTCCTTGTTAGAGTCCGATATCTCAACAAATGAGGCTG CTGATTTAATTAGAATCAGATTATCTCAGTGGTGGGTCACTCTGATTATGGCACTGATGCTAAGTTTTGCATGA
AA sequence Show only first row Show all	>Potri.014G058200.1 pacid=42762625 polypeptide=Potri.014G058200.1.p locus=Potri.014G058200 ID=Potri.014G058200.1.v4.1 annot-version=v4.1 MLLYYIFSILFLHYKTPCSAARPTPTLTTTPAAEVVTVKDPNYTWQNFGSFLDAGKGSHVNGMSELKRYFHHFGYLPSQDLKSITDIFDDRFETAIVRYQ AKLGLQTTGKLDLDTLNQIMAPRCGVPDDTMFHKLHASRHYFYFPGKPRWTRSIPMTLTYSFSKENLINVSLSLSDIEEVFKGAFAKWGSVIPVSFVETD DYAFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPESGRFHLDARETWAIDFDLEKSKVAVHLESVAVHEIGHLLGLGHSSDEKAVMYPSLKPRKKKLDL SVDDIQGVQALYGSNPNFTLGSLLESDISTNEAADLIRIRLSQWWVTLIMALMLSFA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	0	1
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	1.00	0.9563
AT1G57560	MYB	ATMYB50	myb domain protein 50 (.1)		Potri.015G082700 [exp]	2.44	0.9504
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	3.46	0.9396
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	3.87	0.9333
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	4.24	0.9329
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	4.89	0.9312	MYB61.2
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	6.00	0.9263
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	6.92	0.9355
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Potri.003G074600 [exp]	8.83	0.9226	QRT3.2
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	10.90	0.9165

Compare expression of checked genes

Potri.014G058200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.