Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00030 281 / 3e-97 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G09820 47 / 4e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT3G23400 40 / 0.0008 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020700 [exp] 56 / 2e-09 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 47 / 3e-06 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020912 [exp] 284 / 8e-98 AT4G00030 276 / 2e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10033514 [exp] 52 / 8e-08 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 51 / 1e-07 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.014G058400.1 pacid=42762705 polypeptide=Potri.014G058400.1.p locus=Potri.014G058400 ID=Potri.014G058400.1.v4.1 annot-version=v4.1 ATGGCCACATGTCATTGCCTCCTTCTCCCAGTTCCCTTCAAACCTACCATTATCCCTCCTAAACCCATCTCCAAAATCACCTGCTCGTCAATCACAACCC AGTCACAATCAGCCAAGCAACACCTCCTTACTCTAATCTCCGATCAACACCGTGGCCTCAAAACCCAAAATGATCCCATTAAAAGATCCTCAATTATCCA AGCCATTGATGCAATGGCTGATCTAGGAAAAGATACAGTCACCACTGATGACTCACTTTCTGCCACTTGGCGGTTGCTTTGGACCACAGAGAAAGAGCAG CTTTTTATCATAGAGAAAGCTCCATTGTTTGGTACTCAAGCTGGTGATGTTTTGCAGGTTATAGATGTTGAAAAAAGGACTCTTAATAATGTTATCACTT TTCCACCTGATGGGGTTTTCTTTGTACGCTCAAGTATTGAAGTTTCTTCCTCTCAAAGAGTGAATTTTAGATTTACAAGTGCGGTTTTAAGAGGGAAGAA TTGGGAGATACCGTTGCCGCCTTTCGGCCAGGGATGGTTTGAATCGTTGTACATTGATGAGGAGATTAGAGTAGTGAAGGATATCAGGGGAGATTATTTA GTTGTTGACAAAGCTCCTTATGCTTGGAAAGAATGA
AA sequence Show only first row Show all	>Potri.014G058400.1 pacid=42762705 polypeptide=Potri.014G058400.1.p locus=Potri.014G058400 ID=Potri.014G058400.1.v4.1 annot-version=v4.1 MATCHCLLLPVPFKPTIIPPKPISKITCSSITTQSQSAKQHLLTLISDQHRGLKTQNDPIKRSSIIQAIDAMADLGKDTVTTDDSLSATWRLLWTTEKEQ LFIIEKAPLFGTQAGDVLQVIDVEKRTLNNVITFPPDGVFFVRSSIEVSSSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFESLYIDEEIRVVKDIRGDYL VVDKAPYAWKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	0	1
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.014G021400 [exp]	6.92	0.9513	Pt-IFS1.54
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.002G196100 [exp]	7.21	0.9657
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073166 [exp]	7.48	0.9575
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	7.74	0.9632
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.002G055500 [exp]	8.48	0.9606
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	11.87	0.9620
AT3G62410		CP12-2	CP12 DOMAIN-CONTAINING PROTEIN...		Potri.014G120700 [exp]	12.24	0.9592
AT2G35260			unknown protein		Potri.001G143400 [exp]	15.55	0.9531
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	16.70	0.9552
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	19.87	0.9597

Compare expression of checked genes

Potri.014G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.