Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45060 293 / 3e-100 Uncharacterised conserved protein UCP022280 (.1) AT4G26410 116 / 4e-31 Uncharacterised conserved protein UCP022280 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142900 [exp] 437 / 8e-157 AT2G45060 287 / 2e-97 Uncharacterised conserved protein UCP022280 (.1) Potri.001G001300 [exp] 135 / 8e-39 AT4G26410 266 / 4e-90 Uncharacterised conserved protein UCP022280 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042878 [exp] 300 / 6e-103 AT2G45060 286 / 3e-97 Uncharacterised conserved protein UCP022280 (.1) Lus10028177 [exp] 268 / 2e-90 AT2G45060 268 / 4e-90 Uncharacterised conserved protein UCP022280 (.1) Lus10034621 [exp] 112 / 1e-29 AT4G26410 241 / 1e-79 Uncharacterised conserved protein UCP022280 (.1) Lus10035249 [exp] 112 / 1e-29 AT4G26410 244 / 7e-81 Uncharacterised conserved protein UCP022280 (.1) Lus10013474 [exp] 111 / 2e-29 AT4G26410 250 / 1e-83 Uncharacterised conserved protein UCP022280 (.1) Lus10007935 [exp] 101 / 1e-25 AT4G26410 207 / 4e-67 Uncharacterised conserved protein UCP022280 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G058700.1 pacid=42762373 polypeptide=Potri.014G058700.1.p locus=Potri.014G058700 ID=Potri.014G058700.1.v4.1 annot-version=v4.1 ATGGCGACAGACGTCGAATCACCATCACCACAGGAGAAGCCTAGCACCCAGCGGCCACCACCTCCATCAGCAGCAGCAGAAACTTATTTGACTTCGATAA TAAAATCGAAGCCAGTAGAAGAAACCGCGCCATGGATCGATAACGCAATGCAACAAGCTCTTATTTACCAAAAAAACATCCAAGACTCCCTTGACACTGC CATAGAAGCTTCAAAATCTCGCTTTTCTGAAATCACCTCGACTTCTCAAGCTCATTTCAGCCAAACGATTTCAGAGATTGGTGTTTATGAGGGTAAATTA TTTGGCAAGGTTAAAGAGGAGATTAATGTTGCAGCTTCGCATCCGTTGATTACGAGCGCTGTTGCTGTTGGATTGGGACTTGTGGCTCTTAAAAGACCAA GACAAATTTTGTACTACAAGACCTTGCGTCTTTTTACGAGTGAAGAGGCCTTGCTTTCCCAAGCTGATGCTAAAGTAAAGGAATTGCAACAGTCGATTAG CCTCCTGAAGGCTGAAAGTGAGAATTTGAAGAGGAGGGCATCGTTAGCTGAAGAAGAATTGATTAGGGGAAGGACGAAGCTCAGGCAAGCAGGGAAGCAG ATCCAAGGTGTAATTTGCTCAGCTTACAAGATTGAAAGACAAGCTACGGGTTTGAGGGATATTCTTGGGGAGTTGCCTAGAGCAGATGCATCTAGATTTC AGTCACAAGTTTCCAGCTTAGCTTCTGAGGCAAAGCAAGAAAGGAATGCTTTGTCCAAGATGATCACAAAAATCAGTAACTATAGAATCTCAGTTTGA
AA sequence Show only first row Show all	>Potri.014G058700.1 pacid=42762373 polypeptide=Potri.014G058700.1.p locus=Potri.014G058700 ID=Potri.014G058700.1.v4.1 annot-version=v4.1 MATDVESPSPQEKPSTQRPPPPSAAAETYLTSIIKSKPVEETAPWIDNAMQQALIYQKNIQDSLDTAIEASKSRFSEITSTSQAHFSQTISEIGVYEGKL FGKVKEEINVAASHPLITSAVAVGLGLVALKRPRQILYYKTLRLFTSEEALLSQADAKVKELQQSISLLKAESENLKRRASLAEEELIRGRTKLRQAGKQ IQGVICSAYKIERQATGLRDILGELPRADASRFQSQVSSLASEAKQERNALSKMITKISNYRISV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	0	1
AT2G27775			unknown protein		Potri.009G148400 [exp]	3.16	0.8095
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	3.46	0.7957
AT5G54810		ATTSB1, TRP2, T...	TRYPTOPHAN BIOSYNTHESIS B, TRY...		Potri.011G136000 [exp]	3.74	0.7586
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	4.89	0.7607	ATS9.2
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.006G040100 [exp]	10.19	0.6853
AT4G11060		MTSSB	mitochondrially targeted singl...		Potri.013G011800 [exp]	10.95	0.7782
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	12.64	0.7607
AT5G54880			DTW domain-containing protein ...		Potri.001G423900 [exp]	15.00	0.7154
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Potri.001G185600 [exp]	17.54	0.7358
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.001G224100 [exp]	18.65	0.7667	Pt-PAG1.1

Compare expression of checked genes

Potri.014G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.