Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) AT5G51380 434 / 2e-148 RNI-like superfamily protein (.1) AT5G51370 414 / 4e-141 RNI-like superfamily protein (.1.2) AT4G15475 71 / 1e-12 F-box/RNI-like superfamily protein (.1) AT5G23340 66 / 2e-11 RNI-like superfamily protein (.1) AT1G77000 58 / 8e-09 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G80570 57 / 2e-08 RNI-like superfamily protein (.1.2.3) AT5G27920 55 / 1e-07 F-box family protein (.1) AT5G01720 53 / 4e-07 RNI-like superfamily protein (.1) AT1G47056 52 / 7e-07 VFB1 VIER F-box proteine 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143200 [exp] 783 / 0 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.003G107900 [exp] 458 / 2e-157 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.001G125800 [exp] 453 / 2e-155 AT5G07670 509 / 4e-178 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 75 / 4e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 74 / 8e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 66 / 3e-11 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 58 / 1e-08 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 56 / 5e-08 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.013G013100 [exp] 54 / 3e-07 AT5G27920 631 / 0.0 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031165 [exp] 462 / 3e-159 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031741 [exp] 460 / 1e-158 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10031164 [exp] 459 / 1e-158 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10027217 [exp] 459 / 5e-158 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10027218 [exp] 454 / 6e-156 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10031742 [exp] 445 / 2e-152 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10038927 [exp] 456 / 6e-148 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10012764 [exp] 73 / 4e-13 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 71 / 2e-12 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10001264 [exp] 69 / 4e-12 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.014G059100.4 pacid=42763791 polypeptide=Potri.014G059100.4.p locus=Potri.014G059100 ID=Potri.014G059100.4.v4.1 annot-version=v4.1 ATGTCACTTTCACTAGAGGAAGAAACAACAAACCCTAACCCTAATATCAATTCCAAGACGCTACCAATACCAATACCAACACCAACACTAACATCCTTAA ACAGAAAAACCAGAACCTCAAGCTTACCAGAGCTATTGTTCAAAGAGCGAGCACTAAAGCATGGGACTTCGATAATGAAATCTCGGTCAAATAGCCCGTT TGCATCACCTCGACCTGTAGCATCGCCTCGATCTGTCCCACAAAGAACTTTAGGCTTCCATTCTCATGAACCGACCGGACCCGATTACACCTCTCTTCTC AATGATGAGATTCTCCTTCAAGTCTTCAGTAAAGTCCCAGTTTCACACCATGTTTCCAGCTCTCTTGTTTGCAAAAGATGGTTGTTCATTCACGGACGTT TGGTGCAATCAATAAAGGTAATAGATTTTCGTTTCGTTAATTCGGGTCGGGTTTTTACCCGGTTTCCAAATTTGGAAAATATTGATATTGCCCATGCTTG TATTAAAATGCCTAGGAATTCTGGGATTTTGATTACTAGGAATAATTCATCTGTTTATATTGGTACTAAGTTGTTGTCTGATGTGTTTATTGAAGAGAGT GATTTATTATCGTCGGATTTGATTGATAATGGGCTCGAATTGATTAGTAAATGGTATCCTAATTTGAGGAGAATTGCTGTATTTGGCAGCAGTGAAAATG GATTGTTGTGTGTTTCGAGTAAGTGCAAAATGTTGCAAGAATTGGAGTTGCATTGTTGTGGGGATATGTCTTTGAAGGGGATATCCGGGTGTAGGAATTT GCAAGTTTTGAAATTGATTGGGTGCGTTGATGGATTTTTTAATTCGATGGTGAGTGATATTGGGTTGACGATATTAGCTCAAGGGTGTAGGAGGTTAGTG AAGCTTGAGCTATGTGGGTGTGAAGGGAGCTATGATGGGATTAAGGCGATAGGGCAGTGTTGTCAAATGCTTGAAGAATTGACTATTAGAGATCATAGAA TGGATGGTGGTTGGCTGGCTGCATTATTGTTTTGTGAAAATTTGAAGACTTTGAGGTTGCAGTCATGTAAGAGTATTGATTCAAGTCCTGGTCTGCCTGA GCATTTGGGGTCTTGTCCTACACTTGAAGAGTTGCACTTGCAGCAGTGTCAGATGAGGGATAAACAAGCGGTGAAGGCTTTGTTTTTAATTTGCAAGACT GTTAGGGAAATTGTTTTGCAGAACTGTTGGGGATTGGAGGATGAAGTATTTGCAACTGCAACTGTTTGTAGGAGGGCAAGGCTTTTGTCTTTGGAAGGAT GCTCATTGCTGACGACAGGTTGTTTGGAGTCGGTTATTCTGAATTGGAAGGAACTTGAAAGACTAACAGTAATTTCCTGTAACAATATAAAAGACAGTGA AATAACTCCTGATCTGGCAACTCTGTTTTCTGTTCTGAAAGAGTTGAAATGGCGACCAGATTCCAAATCTCTCCTGTCAGCAGGTCTTGCAGGGACTGGA GTGGGAAATAAAGGTGGCAGATTTTTCAAGGGATTGAAAGTTTGA
AA sequence Show only first row Show all	>Potri.014G059100.4 pacid=42763791 polypeptide=Potri.014G059100.4.p locus=Potri.014G059100 ID=Potri.014G059100.4.v4.1 annot-version=v4.1 MSLSLEEETTNPNPNINSKTLPIPIPTPTLTSLNRKTRTSSLPELLFKERALKHGTSIMKSRSNSPFASPRPVASPRSVPQRTLGFHSHEPTGPDYTSLL NDEILLQVFSKVPVSHHVSSSLVCKRWLFIHGRLVQSIKVIDFRFVNSGRVFTRFPNLENIDIAHACIKMPRNSGILITRNNSSVYIGTKLLSDVFIEES DLLSSDLIDNGLELISKWYPNLRRIAVFGSSENGLLCVSSKCKMLQELELHCCGDMSLKGISGCRNLQVLKLIGCVDGFFNSMVSDIGLTILAQGCRRLV KLELCGCEGSYDGIKAIGQCCQMLEELTIRDHRMDGGWLAALLFCENLKTLRLQSCKSIDSSPGLPEHLGSCPTLEELHLQQCQMRDKQAVKALFLICKT VREIVLQNCWGLEDEVFATATVCRRARLLSLEGCSLLTTGCLESVILNWKELERLTVISCNNIKDSEITPDLATLFSVLKELKWRPDSKSLLSAGLAGTG VGNKGGRFFKGLKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	0	1
AT4G30770			Putative membrane lipoprotein ...		Potri.007G103000 [exp]	2.00	0.8817
					Potri.002G166850 [exp]	2.23	0.8678
AT1G77230			Tetratricopeptide repeat (TPR)...		Potri.005G184001 [exp]	2.82	0.8745
AT4G35880			Eukaryotic aspartyl protease f...		Potri.005G108666 [exp]	5.56	0.8172
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G323800 [exp]	6.70	0.8789
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Potri.010G027201 [exp]	10.39	0.8408
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.002G241800 [exp]	11.22	0.8546
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Potri.018G125171 [exp]	12.72	0.8225
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	13.85	0.8553
AT1G53163			unknown protein		Potri.001G398000 [exp]	14.42	0.8388

Compare expression of checked genes

Potri.014G059100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.