Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60660 379 / 4e-134 unknown protein AT3G55860 41 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010359 [exp] 396 / 1e-140 AT3G60660 385 / 4e-136 unknown protein Lus10036493 [exp] 348 / 9e-122 AT3G60660 338 / 2e-117 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07160 [poplar] [flax] SKA1 Spindle and kinetochore-associated protein 1
Representative CDS sequence Show only first row Show all	>Potri.014G060000.1 pacid=42762771 polypeptide=Potri.014G060000.1.p locus=Potri.014G060000 ID=Potri.014G060000.1.v4.1 annot-version=v4.1 ATGGATGTGAAGCAAGCTGGTTCATCACTCGATTCACTGATTTCTTCATTCAATACTCGAATCGCTGAGTTACAAGAACTCGTTATTGCCCGAAACATGT ATCCAGCGAGCAGCGTCACCGATTTGAAGGCGGTGGACGCAGCATTGAAGGCGATGGAGCTGCAAGTGCAAGCTATCAAAGACCGCTTGCGTGAGGAGAC CTTGGCGATCCCTAAAGCTAAAAAACTAATTGAAGCATCACTAAGGCAGCAGAAAAAATTGCAAAGTATGTCTGTACATGTGCCAGAAAGAACAACCTTC TCGAATTCGGAAATTAATAATAGAAGCATTCTGCCAGAAGCATCTAATCAACTTCCTGGTTTTGGTCCGTTGAAACCTGAGGAGCCTGTAGCAACACACA AGGAGAAGAAGGGTCGTAGCTCTCCACCATTGTGGTATATAACTGCTGCTGAGCTGGATTCCCTATCTTCATACATGAGAGGAAGGCTCACCCTAGATAA GGTCAATGCAGCTATTAATGACATGGCAGCATATGCTGATTCAAATTCTCAGCTTATTACAGCCCCAAAGAAGAAGCTGGCAGAGAATCTCTGGGAAAAA GCATTGGAACTAAGGGATATTGCGATGACAGAATCAATAAAGGGAAAACACTTTTTTCTTGAAACTGACATGAAAGGACCTAGCTTGAAGCTTGACAATA CAGGAAAAGCGATTTTGACTGTTCTTCGCCACCTTGGTCGCATCAGTGAGACTCGAATTGGGCATCATCGTGTTATCATTCTTTCGAAGCCTCAAACTTG A
AA sequence Show only first row Show all	>Potri.014G060000.1 pacid=42762771 polypeptide=Potri.014G060000.1.p locus=Potri.014G060000 ID=Potri.014G060000.1.v4.1 annot-version=v4.1 MDVKQAGSSLDSLISSFNTRIAELQELVIARNMYPASSVTDLKAVDAALKAMELQVQAIKDRLREETLAIPKAKKLIEASLRQQKKLQSMSVHVPERTTF SNSEINNRSILPEASNQLPGFGPLKPEEPVATHKEKKGRSSPPLWYITAAELDSLSSYMRGRLTLDKVNAAINDMAAYADSNSQLITAPKKKLAENLWEK ALELRDIAMTESIKGKHFFLETDMKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILSKPQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60660			unknown protein		Potri.014G060000 [exp]	0	1
AT3G09430			unknown protein		Potri.006G084500 [exp]	1.00	0.9592
					Potri.017G113501 [exp]	8.00	0.9507
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	9.48	0.9503
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Potri.005G142200 [exp]	9.79	0.9464
AT5G37010			unknown protein		Potri.012G145200 [exp]	13.03	0.9436
AT3G16490		IQD26	IQ-domain 26 (.1)		Potri.001G190500 [exp]	13.41	0.9189
AT5G65120			unknown protein		Potri.007G090500 [exp]	14.83	0.9349
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	17.83	0.9436
AT3G03130			unknown protein		Potri.013G081600 [exp]	18.89	0.9425
AT1G10780			F-box/RNI-like superfamily pro...		Potri.001G210800 [exp]	19.33	0.9273

Compare expression of checked genes

Potri.014G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.