Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45150 453 / 2e-158 CDS4 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) AT3G60620 437 / 8e-153 CDS5 cytidinediphosphate diacylglycerol synthase 5 (.1) AT1G62430 69 / 2e-12 ATCDS1 CDP-diacylglycerol synthase 1 (.1) AT4G22340 63 / 1e-10 CDS2 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3) AT4G26770 59 / 2e-09 Phosphatidate cytidylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G001200 [exp] 65 / 3e-11 AT4G22340 705 / 0.0 cytidinediphosphate diacylglycerol synthase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009281 [exp] 490 / 3e-173 AT2G45150 520 / 0.0 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) Lus10015882 [exp] 441 / 1e-152 AT2G45150 470 / 1e-163 cytidinediphosphate diacylglycerol synthase 4 (.1.2.3) Lus10028636 [exp] 54 / 1e-07 AT4G26770 656 / 0.0 Phosphatidate cytidylyltransferase family protein (.1) Lus10018934 [exp] 54 / 1e-07 AT4G26770 656 / 0.0 Phosphatidate cytidylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [poplar] [flax] CTPT PF01148 [poplar] [flax] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Potri.014G060100.3 pacid=42763005 polypeptide=Potri.014G060100.3.p locus=Potri.014G060100 ID=Potri.014G060100.3.v4.1 annot-version=v4.1 ATGGCGTCCTCCTCGTTTGTAGAAATTGAGCGGTTCCATTTGATACCAGTACTGTCAGCAACTTGCCCCTGCCACCGTCCTCTATTATCTAAAAATTCCC TAATTCTCAATCGAAAGAAACTCAATTTCGATCTCCTCTTAAATGGATCCAAAACCGCAGTTCCGGTTCACGCTAAGAGGGCGACGGCGAAGCGGTGGTT AATTACGTCCGTGGCCAGAGCTGAGGCTGATAGCGTCGACGAAGACAGCAGCAAAGAGGAAGTCGAGAAAGATCATATTTCACCTGCAAAGGAGGATTCT GTTTCACAACTTCAACAAAAAGCGAGTCAACTGAAGAAAAGAATCATTTTTGGACTTGGGATTGGGATTTCTGCTGGAGGCATAGTATTAGCTGGAGGAT GGGTTTTCACTGTAGCTTTAGCAGCCGTTGTATTTGTTGGTGCGCGTGAGTACTTTGAATTGGTTAGAAGTCGTGGAATCACTGCAGGAATGACTCCACC TCCTCGATATGTGTCACGAGTTTGCTCTGTTATTTGTGCTTTCATGCCTGTTCTTACCTTGTATTTTGGTCAGATTGATATTCCAGTGACATTTGCTGCT TTTGTTGTGGCAATGGCATTGCTTCTACAGAGAGGGAATCCTCGTTTTTCTCAGCTTAGTAGTACTATATTTGGGCTATTTTATTGTGGATATCTTCCTT GTTTCTGGGTGAAGCTTCGATGTGGTTTAGCAGCCCCTGCCTTGAACACAAGAATAGGAACAACATGGCCTGTTCTTCTTGGAGGACAAGCTCATTGGAC TGTGGGTCTTGTAGCAACCTTGATTTCTATGAGCAGCATCATTGCAGCCGATACATATGCTTTTATAGGTGGCAAGGCATTTGGCAGGACACTCCTAACT AGAATTAGTCCAAAGAAGACATGGGAAGGAACAATTGTAGGCTTGGGTGGCTGTATAGCCACTTCGGTGGTATTGTCAAAGTTTTTTAGCTGGCCAACAT CCTTGCTAAGTGCAATTGCTTTTGGGTTTCTAAATTTCTTCGGATCTATTTTTGGTGATCTCACGGAGTCAATGATCAAACGTGATGCAGGAGTCAAGGA CTCTGGCTCATTAATACCTGGACATGGTGGGATACTGGACAGATCAGACAGTTACATTTTCACTGGTGCACTTGCGTACTCCTTCGTTAAAGCCTTCCTG CCACTTTATGGAGTTTGA
AA sequence Show only first row Show all	>Potri.014G060100.3 pacid=42763005 polypeptide=Potri.014G060100.3.p locus=Potri.014G060100 ID=Potri.014G060100.3.v4.1 annot-version=v4.1 MASSSFVEIERFHLIPVLSATCPCHRPLLSKNSLILNRKKLNFDLLLNGSKTAVPVHAKRATAKRWLITSVARAEADSVDEDSSKEEVEKDHISPAKEDS VSQLQQKASQLKKRIIFGLGIGISAGGIVLAGGWVFTVALAAVVFVGAREYFELVRSRGITAGMTPPPRYVSRVCSVICAFMPVLTLYFGQIDIPVTFAA FVVAMALLLQRGNPRFSQLSSTIFGLFYCGYLPCFWVKLRCGLAAPALNTRIGTTWPVLLGGQAHWTVGLVATLISMSSIIAADTYAFIGGKAFGRTLLT RISPKKTWEGTIVGLGGCIATSVVLSKFFSWPTSLLSAIAFGFLNFFGSIFGDLTESMIKRDAGVKDSGSLIPGHGGILDRSDSYIFTGALAYSFVKAFL PLYGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45150		CDS4	cytidinediphosphate diacylglyc...		Potri.014G060100 [exp]	0	1
AT1G59970			Matrixin family protein (.1)		Potri.008G027900 [exp]	9.48	0.7769
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Potri.005G053200 [exp]	11.83	0.7435	Pt-BZO2.3
AT5G42810		ATIPK1	inositol-pentakisphosphate 2-k...		Potri.002G032900 [exp]	12.24	0.7320
AT1G59970			Matrixin family protein (.1)		Potri.008G027600 [exp]	12.96	0.7676
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	19.59	0.7728	Pt-PHOT1.1
AT5G54520			Transducin/WD40 repeat-like su...		Potri.001G410500 [exp]	19.59	0.7305
AT5G19460		ATNUDT20	nudix hydrolase homolog 20 (.1...		Potri.006G157800 [exp]	21.44	0.6985
AT5G43822			Pentatricopeptide repeat (PPR)...		Potri.005G253200 [exp]	25.41	0.7094
AT5G19150			pfkB-like carbohydrate kinase ...		Potri.008G203600 [exp]	28.93	0.7157
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.002G207200 [exp]	33.67	0.7452

Compare expression of checked genes

Potri.014G060100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.