Plant FIBer expression Database

Potri.014G060400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60650 48 / 8e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G144400
[exp]
199 / 1e-66 AT3G60650 47 / 2e-07 unknown protein
Potri.003G109500
[exp]
41 / 4e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G060400.1 pacid=42762624 polypeptide=Potri.014G060400.1.p locus=Potri.014G060400 ID=Potri.014G060400.1.v4.1 annot-version=v4.1
ATGTCAGTGATCACATATTCTTGCTATTTTCTGCTTTCAATTTTATGCATTTCCTTGCATGCATGTAATGCCAGACCACTTGCTGATATTGATAAGAAAC
CTGAGAAGAAATTTCAGATAATTTCTAATCAGACTAGTGATCAGAAGGAGATTTCAGTTACCATAGTATCCAAGGCCGATTCCTCTTCGTCAAATGAATT
TGGAGCGGCAAAAGAAGATAGCATTGCAAAGACTGATCAGTTGGATGATAATGCTCAGAAGCTGAAGGACTCGAGAGCCAAACAGAAGTCAATGAGTGAC
GAGAAAGTAAAAGATTCAGGTGCTGCTCTCAAAGAGTCTCTTGTTTCAGTTTCTTGGCCTGTGCCTCAAAAGAAACGTGGCGAAACGCATCCTGGTTTCA
ACTTGGATTATTCTCCACCAAAGACACACCCTCCTTCCCATAACTGA
AA sequence
>Potri.014G060400.1 pacid=42762624 polypeptide=Potri.014G060400.1.p locus=Potri.014G060400 ID=Potri.014G060400.1.v4.1 annot-version=v4.1
MSVITYSCYFLLSILCISLHACNARPLADIDKKPEKKFQIISNQTSDQKEISVTIVSKADSSSSNEFGAAKEDSIAKTDQLDDNAQKLKDSRAKQKSMSD
EKVKDSGAALKESLVSVSWPVPQKKRGETHPGFNLDYSPPKTHPPSHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60650 unknown protein Potri.014G060400
[exp]
0 1
AT3G50740 UGT72E1 UDP-glucosyl transferase 72E1 ... Potri.007G030400
[exp]
5.09 0.9333
AT5G12380 ANNAT8 annexin 8 (.1) Potri.003G200700
[exp]
7.07 0.9285 ANN1.1
AT4G13010 Oxidoreductase, zinc-binding d... Potri.001G452600
[exp]
8.48 0.9021
AT3G42180 Exostosin family protein (.1.3... Potri.018G124832
[exp]
10.58 0.9270
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.019G091800
[exp]
11.95 0.8957
AT5G54370 Late embryogenesis abundant (L... Potri.012G145400
[exp]
13.41 0.9139
AT5G65880 unknown protein Potri.014G006850
[exp]
14.96 0.8717
AT1G51190 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA... Potri.003G205700
[exp]
16.73 0.9207 RAP23
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.016G058200
[exp]
17.74 0.8997 HPOX14.2
AT5G44650 Y3IP1, AtCEST Ycf3-interacting protein 1, Ar... Potri.019G079401
[exp]
18.49 0.8079

Potri.014G060400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.