Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05030 751 / 0 Major facilitator superfamily protein (.1) AT1G67300 375 / 2e-125 Major facilitator superfamily protein (.1.2) AT5G16150 376 / 8e-125 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G79820 365 / 4e-121 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT3G18830 187 / 1e-52 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT1G75220 179 / 3e-50 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 177 / 1e-49 Major facilitator superfamily protein (.1) AT3G05150 176 / 3e-49 Major facilitator superfamily protein (.1) AT4G36670 174 / 2e-48 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 174 / 5e-48 AtPLT4 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 387 / 6e-129 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.018G083200 [exp] 376 / 1e-125 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.001G185300 [exp] 364 / 6e-121 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.017G116400 [exp] 296 / 1e-96 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.007G024300 [exp] 183 / 1e-51 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 180 / 2e-50 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 179 / 5e-50 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.002G259900 [exp] 174 / 3e-48 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 173 / 1e-47 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035315 [exp] 712 / 0 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 679 / 0 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10009158 [exp] 380 / 3e-126 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 379 / 5e-126 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 375 / 4e-124 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 364 / 2e-119 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10034930 [exp] 334 / 8e-109 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035862 [exp] 187 / 4e-55 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10025565 [exp] 184 / 1e-51 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10035255 [exp] 179 / 1e-49 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G060800.1 pacid=42763560 polypeptide=Potri.014G060800.1.p locus=Potri.014G060800 ID=Potri.014G060800.1.v4.1 annot-version=v4.1 ATGTGGGTGGCTACGGTACTTCCTAAACCGGTTCCTCCGGTTCTTTCCGTTCTCACTTCTTCAAGAAACCCTAAACAAAGTTCTTTTCATTTCCGGTTCT CGTATCGACCTTTAAACCTTAAAGTTTCAGCAACAAAGCAGCAGCAGCAGCTTCCCGAGCCGAAGGCTGATAAAAAAAACCCAAGTAGTTCTGATTTAGG ATGGCTCCCTGCTTTTCCTCACGTCTTGATTGCCTCTATGTCAAATTTTCTATTTGGTTATCATATAGGGGTAATGAATGGTCCTATTGTTTCTGTTGCA AAAGAGTTGGGTTTTGAAGGAAATTCAACTCTTGAGGGTCTTGTGGTTAGCATTTTTATTGCTGGTGCATTTCTTGGAAGCGTGGCATCAGGTTCACTAG TTGATAAACTTGGATGTCGTCGCACGTTTCAGCTTGACACAATACCATTAATTCTGGGTGCACTTGTCAGTGCGCAAGCGCACTCTTTGGATGAAATACT CTGGGGAAGATTTCTTGTTGGGCTTGGGATTGGTGTGAACACTGTTCTTGTTCCAATCTATATTTCGGAGGTTGCGCCAACAAAATACAGAGGTTCATTG GGAACCTTGTGTCAGATTGGGACATGTCTTGGAATCATTGCATCATTGTTCCTTGATATTCCTTCTGAAACTGATCCACACTGGTGGAGGACAATACTCT ACATTGCAAGTGCTCCTGGATTTATTCTTGCACTCGGTATGCAGTTTGCTGTGGAAAGCCCCCGCTGGCTATGTAAAGTAGGGAGGCTAGATGATGCTAA AACAGTTATTCGTAATATTTGGGGATCATCTGAAGTTGAAACGGCAATCCAAGATTTCCAATCAGTCATCAAGAATAATGGCGTTAATGTGGGTAGTGGA TGGTTGGAACTCCTGGAGGAACCACATTCTAGAGTTGCATTTATCGGAGGTGCCCTTTTTGTACTGCAACAGTTTGCTGGGATAAATGGAGTCCTTTATT TTTCATCGTTGACTTTTAAAGATGTCGGTATAACAAGTAGCAGTTTAGCAAGCTTATTTGTTGGACTTGCCAACTTTGCAGGTGCACTTTGTGCTGTATA CCTAATGGATAAGGAAGGGAGACAAAAGCTCCTGATTGGCAGTTACTTGGGAATGGCAGTTTCAATGTTTCTTATTGCTTGTGCTATCGGTTTTCCAGTA GATGAAGAACTCAGTCACAATTTGTCAATACTAGGAACTCTGATGTACATTTTCACATTTGCCATCGGAGCTGGCCCTGTAACTGGTCTCATCATACCAG AACTGAGCAGCGCCAAGATGCGAGGGAAGATTATGGGGTTCAGTTTTTCTGTTCATTGGGTTTGCAATTTCCTGGTGGGTCTATTATTTCTCGACTTGGT GGAGATTTTTGGAGTTGCTCCTGTTTATACCGGCTTTGGCAGTGTGTCCTTGTTAGCAGCAATATATGCCAAGTATTTCTTAGTTGAAACTAAAGGACGC TCTCTTGAAGAGATTGAAATGTCTCTGAACCCCGATTTCTCTGTCAGAGACAAGTGA
AA sequence Show only first row Show all	>Potri.014G060800.1 pacid=42763560 polypeptide=Potri.014G060800.1.p locus=Potri.014G060800 ID=Potri.014G060800.1.v4.1 annot-version=v4.1 MWVATVLPKPVPPVLSVLTSSRNPKQSSFHFRFSYRPLNLKVSATKQQQQLPEPKADKKNPSSSDLGWLPAFPHVLIASMSNFLFGYHIGVMNGPIVSVA KELGFEGNSTLEGLVVSIFIAGAFLGSVASGSLVDKLGCRRTFQLDTIPLILGALVSAQAHSLDEILWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSL GTLCQIGTCLGIIASLFLDIPSETDPHWWRTILYIASAPGFILALGMQFAVESPRWLCKVGRLDDAKTVIRNIWGSSEVETAIQDFQSVIKNNGVNVGSG WLELLEEPHSRVAFIGGALFVLQQFAGINGVLYFSSLTFKDVGITSSSLASLFVGLANFAGALCAVYLMDKEGRQKLLIGSYLGMAVSMFLIACAIGFPV DEELSHNLSILGTLMYIFTFAIGAGPVTGLIIPELSSAKMRGKIMGFSFSVHWVCNFLVGLLFLDLVEIFGVAPVYTGFGSVSLLAAIYAKYFLVETKGR SLEEIEMSLNPDFSVRDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05030			Major facilitator superfamily ...		Potri.014G060800 [exp]	0	1
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.013G108600 [exp]	2.00	0.8798
AT5G20300		Toc90	translocon at the outer envelo...		Potri.006G063500 [exp]	3.16	0.8364
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	4.89	0.8588
AT1G19720			Pentatricopeptide repeat (PPR-...		Potri.002G030200 [exp]	5.29	0.8580
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024200 [exp]	5.91	0.8381
AT1G24310			unknown protein		Potri.008G176100 [exp]	11.74	0.8409
AT3G03560			unknown protein		Potri.013G073400 [exp]	13.85	0.8234
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Potri.005G232200 [exp]	14.42	0.8378
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Potri.010G094800 [exp]	22.04	0.8081
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.002G010532 [exp]	22.71	0.7921

Compare expression of checked genes

Potri.014G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.