Plant FIBer expression Database

Potri.014G061000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60590 382 / 1e-131 unknown protein
AT1G48460 47 / 9e-06 unknown protein
AT5G63040 44 / 8e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G088700
[exp]
68 / 2e-12 AT5G63040 344 / 4e-117 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015886
[exp]
427 / 3e-143 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1)
Lus10039957
[exp]
62 / 1e-10 AT5G63040 323 / 5e-109 unknown protein
Lus10027687
[exp]
59 / 2e-09 AT5G63040 321 / 6e-108 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G061000.3 pacid=42762987 polypeptide=Potri.014G061000.3.p locus=Potri.014G061000 ID=Potri.014G061000.3.v4.1 annot-version=v4.1
ATGGCCTTTGTTTCCGTGTTTCAGAGATTGAGACCATATCGTATATGTAAACTTGGTAAAGCTTCGATTGCAAATCAAGCTATGGCATCACTAGTTAAAG
CTCCTCCTACAATGTCTACTATTAATGCTCACCAAGTCCATCTCAGGAAGCTAAAATTGCTAAGCAACCTAAACATGCATCATGGTCTCAGATTTCCTAG
AATTCATGTTAATCACACCACTGTTTGCTGCGCTAAATTGACTCCATGGGAACCTTCACCTGTCACATATGCTCCTACCATTGATGCTTCTGGTAACTTA
TTGAAGAAAACTAGCAACATATTTGAAACCTTGAAGTCTGAAGACACAGCTGAAGCACCAGCAACCAACAGTGAAGAGCTTACAGATACAAAGAATCGGT
CATTGGTGCAATTTCAGTTTCTTAAATGGCCGATGTGGCTTCTGGGCCCTTCTCTTCTCCTGACTACAGGCATGGTACCAACATTATGGCTGCCTCTATC
TTCTGTATTCCTTGGTCCCAATATAGCCAGCCTTCTTTCCTTGATTGGACTGGATTGCATCTTCAATCTTGGTGCTACCCTTTTTCTTCTAATGGCTGAT
TCTTGTTCTCGGTCCAAAAACCAGGCACAAACCTGCAATAGCAAGCCTCCTTTGAGTTACAAATTTTGGAACGTGGTTGCAACTGTATCTGGTTTTGTGA
TTCCCTTGATGGCGTTATTGGGATCTCAAAAGGGCACCCTCCTACCCCAGCTGCCATTTATCCCATTTGCAGTTCTATTGGGTCCTTACATGCTGCTTTT
ATCTGTACAAATTCTGACTGAGCTGCTGACCTGGCACTGGCAGTCACCAGTATGGTTGGTAACCCCAGTTGTGTATGAGTCTTATCGGCTGTTACAGCTG
ATGAGGGGGTTGAAGCTTGGGGCTGAGCTCAGTGCTCCAACATGGATGTTGCATATGATTAGGGGGCTGGTATCTTGGTGGATTCTAATCCTTGGTGTTC
AGCTCATGAGTGTTGCTTGGTTTGCCGGTTTCGCTGCTCGATCTCAGCAGCAACACTCTCCTGCTGCTTCTGGTGGTTAG
AA sequence
>Potri.014G061000.3 pacid=42762987 polypeptide=Potri.014G061000.3.p locus=Potri.014G061000 ID=Potri.014G061000.3.v4.1 annot-version=v4.1
MAFVSVFQRLRPYRICKLGKASIANQAMASLVKAPPTMSTINAHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCAKLTPWEPSPVTYAPTIDASGNL
LKKTSNIFETLKSEDTAEAPATNSEELTDTKNRSLVQFQFLKWPMWLLGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMAD
SCSRSKNQAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLLSVQILTELLTWHWQSPVWLVTPVVYESYRLLQL
MRGLKLGAELSAPTWMLHMIRGLVSWWILILGVQLMSVAWFAGFAARSQQQHSPAASGG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60590 unknown protein Potri.014G061000
[exp]
0 1
AT1G64970 VTE4, TMT1, G-T... VITAMIN E DEFICIENT 4, gamma-t... Potri.013G077000
[exp]
1.41 0.9709
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.013G056500
[exp]
1.73 0.9706
AT5G23670 ATLCB2, LCB2 long chain base2 (.1.2) Potri.015G103800
[exp]
3.46 0.9593 LJLCB2.1
AT5G55210 unknown protein Potri.001G356400
[exp]
3.74 0.9541
AT1G78290 SRK2C, SNRK2-8,... SNF1-RELATED PROTEIN KINASE 2C... Potri.005G162500
[exp]
4.58 0.9412
AT5G27280 Zim17-type zinc finger protein... Potri.005G246200
[exp]
6.48 0.9549
AT3G51880 AtHMGB1, NFD1, ... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.010G189900
[exp]
7.48 0.9534
AT5G50280 EMB1006 embryo defective 1006, Pentatr... Potri.012G091800
[exp]
8.94 0.9498
AT5G49015 Expressed protein (.1.2) Potri.008G039901
[exp]
10.09 0.9312
AT2G20000 CDC27b, HBT HOBBIT, CDC27 family protein ... Potri.017G065600
[exp]
10.39 0.9433

Potri.014G061000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.