Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45130 269 / 4e-91 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G20150 222 / 3e-72 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 202 / 8e-64 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G26660 198 / 1e-62 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT4G11810 59 / 1e-09 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT4G22990 52 / 1e-07 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G63010 45 / 4e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143900 [exp] 431 / 6e-155 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G131500 [exp] 210 / 4e-67 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 206 / 2e-65 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 196 / 6e-62 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.001G135950 [exp] 189 / 3e-61 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 192 / 6e-60 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.006G253400 [exp] 184 / 5e-57 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G193200 [exp] 133 / 2e-38 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.003G120600 [exp] 56 / 1e-08 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043272 [exp] 213 / 2e-68 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 210 / 2e-67 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 201 / 9e-62 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 180 / 2e-55 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 176 / 1e-53 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 61 / 2e-10 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 53 / 1e-07 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 53 / 1e-07 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.014G061400.1 pacid=42763726 polypeptide=Potri.014G061400.1.p locus=Potri.014G061400 ID=Potri.014G061400.1.v4.1 annot-version=v4.1 ATGAAGTTTGGCAAGAGATTGAAGCAACAAGTTCAAGAAACCTTGCCAGATTGGCGTGACAAGTTTTTGTCTTACAAGGAATTGAAGAAGCTTGTTCGTC TGATCTCATCGGCTCCACCTTTCTCGTATGGATCAGTTGAGTATGGAAAGGCAGAGGCTGAGTTTGTGCGTCTGCTGAACAGTGAAATTGACAAGTTTAA TACTTTTTTCATGGAACAAGAAGAGGATTTCATTATTCGGCATGAGGAGCTAAAGCAGAGGATTCAGAAAGTGATTGATACTTGGGGGCCAAGTGGAAGT CAGCCTTCAGAGGCAGAGTACAAAGAGCAGATGAGAAAGATTAGAAAAAACAGTGTCAATTTCCACGGTGAAATGGTGCTTCTGGAGAATTACAGCAACA TCAATTACACAGGATTGGCCAAGATATTGAAGAAGTATGACAAGAGAACAGGTGGGTTATTGCGCCTTCCATTCATTCAAAAGGTGTTGGAGCAACCCTT TTTTATTACCGATCTAGTATCAAAGCTTGTCAAGCAATGCGAATACATGATAGATACAGTATTCCCTGTAGAGGAAGAAGAGAGAGTGAAAGAAGGAAGA GAAGCAATAACGGTTGCGGGAGAAGGGATTTTCAGGAACACAATTGCAGCTCTAATGACCATGCAAGAAATTAGAAGAGGCAGCTCTACTTACAGCCATT TCTCTCTGCCTCCTCTGAACTTGCCAGATTCTGATCTTATTCAGTCATTCCAGCTCAATTCTCCTATATCTATTGTCTAA
AA sequence Show only first row Show all	>Potri.014G061400.1 pacid=42763726 polypeptide=Potri.014G061400.1.p locus=Potri.014G061400 ID=Potri.014G061400.1.v4.1 annot-version=v4.1 MKFGKRLKQQVQETLPDWRDKFLSYKELKKLVRLISSAPPFSYGSVEYGKAEAEFVRLLNSEIDKFNTFFMEQEEDFIIRHEELKQRIQKVIDTWGPSGS QPSEAEYKEQMRKIRKNSVNFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLEQPFFITDLVSKLVKQCEYMIDTVFPVEEEERVKEGR EAITVAGEGIFRNTIAALMTMQEIRRGSSTYSHFSLPPLNLPDSDLIQSFQLNSPISIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.014G061400 [exp]	0	1
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	1.00	0.8719	Pt-HDA9.2,HDA904
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	2.00	0.8656
AT5G17550		AtPEX19-2, PEX1...	peroxin 19-2 (.1)		Potri.001G157900 [exp]	3.00	0.8376
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	3.46	0.8568
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	8.36	0.8241	MBD5.2,MBD904
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.003G110901 [exp]	8.48	0.8298
					Potri.005G130601 [exp]	11.48	0.8062
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.008G136040 [exp]	12.48	0.8277
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	14.14	0.8028
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	17.86	0.7997

Compare expression of checked genes

Potri.014G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.