Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00060 1480 / 0 MEE44 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) AT5G53770 105 / 6e-23 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G400800 [exp] 86 / 7e-17 AT5G53770 504 / 4e-175 Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009279 [exp] 1593 / 0 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10015887 [exp] 923 / 0 AT4G00060 717 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10015886 [exp] 687 / 0 AT4G00060 669 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10008574 [exp] 84 / 6e-16 AT5G53770 552 / 0.0 Nucleotidyltransferase family protein (.1) Lus10032691 [exp] 57 / 1e-07 AT5G53770 479 / 3e-164 Nucleotidyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01909 [poplar] [flax] NTP_transf_2 Nucleotidyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.014G066000.5 pacid=42763470 polypeptide=Potri.014G066000.5.p locus=Potri.014G066000 ID=Potri.014G066000.5.v4.1 annot-version=v4.1 ATGTCCGTACCAAACCCCAATAATAATTTTTCAAAGCACCAAAATATCCCTAACGCGCTCATGACTCAGAACCACCTTATCGGCTCACTCACTTCTCACA TCTCTCTCTACCACTCCCAATCCAACCCCCCCTCCTCTCCAAACCCTAACCCTAGATCGTCAATCTTAAAATGGTTTAAATCTCTCTCCGTTCATCAACG CCAATCCCACTTAACTACCGTTGATTTCAAATTCACTCAAATCCTCCTTCAAATGCTAGCCAAATTACACTCTCACGGTCACTGCCGTTTCATTATCCTC CCCGATCTCCTCTCACGCGACCTCCCTAGCCTCTGCTTTAAGAAATCACGTGGGCTGCTGTCCAGAGTCGCTGAGTCTAATGAGTCGGAACGACTGATTT TTGAGTCGACTCGGTTGTTTAGTTCTAGAGAAGGGGAGAAAGTGGACGATTGTAGGAGTGGAGCTGAGGGTCTGGATTCGGTTACGGTTAGCGAGGATTT AATTGAAAATGTTGAAAAGTTTGTGGAGTTGATGGATGACATTTCGAATGGGGGGTTTTTGAGAGGGGAAGAGAGCGAGTTAGGGACGGATTGGGTGGAA TTGGAGTGGTTAAAAGTGAGAGGTTATTATTGTATCGAGGCGTTTTTAGCGAACAAGCTAGAAGTGGCGTTGAGGCTGGCGTGGTTGAATTGTGGGAATG GGAAGAAAAGAGGGGTGAAGTTGAAAGAGAAATTGAGTGCCGCAGGTGTGGCAGCTAATGTGTTTTGGAGGAGGAAAGGGTGTGTTGATTGGTGGAGGAA TTTGGATGCGGAAGTAAGGAGGAAGGTTTTAAATTTTGCGCTTGGGAAGGCGGCAAAATCATTGACTCGTGAAATTCTGAAGGATGTGAGTGGTGTATCG GGGGATGAGCTGTCACTGTTTAGAGCAGGAGTGCAGCGACCTTGGAGGGACTTGCATGCTGAATCACGGCAAAGGATTTTCCTAAAACTTCCAGCTGATG CGGAATTTGGTTTGGCCCCAAAGCCTTCTTTTTCTGGGAAAGATGCTTCTTTTGCAAATATATTTAATAGTTTATTCGTGCTTCAGGATATTGTTAGTTT GGTGTTGCCAGATCAGGGTAGTGAGTATGATACATCACATATATTTTTTAGCATGCTGGGTTCTCTTGGCACCCTTTCTGATTGTATATTAAGAAAACTA CGAGGACTTGTGATGGTTATTTCACTTGATTGCACAAGGCTTGAACTTCTCGGAGAGGGAACATCAAACTCTTCAGCCAATAAACCTAGCGAAAAGCTCG GTGCAGGTAGTCGTAGAAAAAAGGGGAAGACTCAAAATATGAAAAAGCTGATGAACCCCACACCAGTGAAAAGTGTTGACGAGTCTTCCTTTAAGAAACT TGCCGAGGATATCAAATGTGCGCCAGCCTGTATTAAGAAGACAGAGTTGATGGAGTCCAATGAGATGCCTGGCATTCCTCATGAGAATGAAAATCACAGA GACATATCATCTCCAACAGTTGAAATGGAACACACACAAGGATTGGTTCATGAAAAAAAACGAACTGCTGGAAGGAAGAACAGGAAAGGAAGAAACAAAA AGAAAAAATCTAGCTTTAGCAATCCAGTTGAAGTAAGAAAACCTGAAATTGCCGTTTCAGAGGCTCCCTCCTTTTCTGTTTGCTCATCAGACGAGGAAGC AAAGCTTTGTAGGTTATCTGACAATTTGACTACACAGAAAGCATCAAATGATAGTTTAATTGATCCTTCAATTAATGAGCCCACCAGGAAGGAGATAGAT GCCCTTGGCATTCCAGAGGATCATGCTGTTGGTTGCACTGAAGGCATCTCTGATGCAGGTCTGGAGCATTACCGATCTTCAAATGGTTTTGTTGACAATA AAAGTATGCCATCCAGAAGAGAGACACGTTGTGGGGTAGGCCAGAATATAATATATCAAGTTGCAACCACAAAGGAGCTAATAACTGTTTCTAGCAATGA AGGCACCAGCTTTTTGAACAAAAAAACTGAGGTTAAATTAGATGTTGGCAACAAATTAGTCAGAACCCATGAAGTGAAAGAGGTACCCACCTTAAATCGG GGAGAAGAGAGTGAAAATTTTCATGAAAGTGGATCCAAAGGCCTTTCAGATTGCCTTTCATATGAGTGGCCTAGTTTAGGCCCCGTCTACTTTCCATCTA TAAATTCACATCTTCCACCTGCTACATATAGATTGCATCTGGATGTTGGTCACAACTGGCATAATCACATTCATCAACCTTTTTTACCTACGGTGCATCA GGCTAGAAATTCTCCTATTGAAGGTGGATCCAATAGGATGTTGTCTCAACCATTGCCAATGAGTTTAGATTGGCCTCCAATGGTTAGGAGCAACTGTGGA TTAGCTCCGACTATGACATGCAATTATGATTCAGGATTTATCTCGAGGCGGCAATCTACTTTTCAGAAAAGTTACACCGCTAAGAACATGCAGTACATCT CAAAAACCTTTGATGACGAGAGGAGGTGTTCTGGGGATGCAATTGACTTTACTGAAGCAACAAGTTCACAGGAACTAATGGATGAATATGAAAACCATTG GATATCAGAGGAAGAATATGAGGTGCATGCAGTTTCTGGGATAGACTATAATCAGCACTTCGGTGGCGGTGTGATGTACTGGGATCCTTCTGATCATCCA GGTACTGGTTTCTCTCGACCACCTTCCCTTAGTTCTGATGATAGCGGATGGCCTTGGCATGAAGCAGAGCTGAATAGGGCAGTTGATGATATGGTTGCCT TCTCATCTTCTTATAGTACAACTGGATTGACTTCCCCAACTGCTGCTTCATTCTGTTCTGCTTTTGATCCTTTGGTCCCTGGACACCAGGCACTTGGTTA TGTTATGTCAGGAAATGAAGTACCTGGTAAAGCTATGCTTTCATCAACTGTGACAGATGCTGCTGCAGAGGAGGATGTCTCTGGATCTTTGGCCAGTTTA TCTAGTGATGTTGAAGGCAAGGCAGGAGATTCACTTCCTTACCCAATTTTGCGGCCTATTATCATTCCAAATATGTCAAGGGAAAGATCAAGATCTGATT TCAAGCGTAGTCTTGATCACAAAAGCCCTTGTGTTCCTCCTACTAGACGGGAACATCCCCGGATAAAGCGGCCACCATCACCTGTAGTGCTTTGTGTTCC ACGGGCTCCCCGTCCTCCACCACCCTCTCCTGTGAGTGACTCTAGAAAGCACAGGGGTTTTCCAACTGTTAGGTCTGGTAGCTCCAGCCCAAGACAGTGG GGTGTGAGAGGTTGGTACCATGATGGAACTAATTTGGAGGAAGCTTGTGGACGTATGGATGGTGCTGAAGTTGTTTGGCCTTCTTGGAGAAATAAAAAAC TTTCAACCCATCCAATGGTGCAGCCACTCCCTGGGGCTTTGCTGCAAGATCGTCTAATTGCAATGTCCCACCTAGCCCGTGATCAGGATCATCCAGATGT TTTGTTTCCTCTTCAACGAGCTGAGATACAGAATTGCCCTACACGAAAGGCTTCTCTTTGCTTAGTACAGAGCCTTCTTCATGATGAAATTGACTCTTTT TGTAAGCAGGTTGCTGCAGCAAATATGGCCAGGAAACCTTTCATTAATTGGGCTGTCAAGCGGGTTACTAGGTCTCTCCAAGTTCTATGGCCTAGGTCCA GGATAAATATCTTTGGATCAAGTGCAACTGGTTTGGCCCTTCCAACAAGTGATGTGGATCTTGTGGTTTGCCTCCCTCCAGTGAGGAACTTGGAACCTAT CAAGGAAGCTGGGATTTTAGAGGGTCGTAATGGTATTAAAGAAACTTGTCTTCAGCATGCAGCTCGGTATCTTGCCAATCAGGAGTGGGTAAAAAATGAT TCACTGAAGACTGTGGAGAATACAGCTATACCTGTTATTATGCTTGTAGTGGAGGTTCCCACTGATCTGATCACCTCTACTGCTTCTAATGTACAATCAC CAAAGGAGGAGCCAATTCATTTGACTGTTGAACATGACATCCAAGTCCAGTCCAATATGGTTGTTTTAGAGGACTCAATTTCACCTAAGTGCACACAACT TAATTGTGATAGCAAAAGGGATGTGAAATCAATTCGTCTTGATATCAGTTTCAAGTCTCCATCTCATACAGGGCTCCAAACAACGCAACTGGTTAAAGAT CTCACGGAACAATTTCCAGCTGCAACACCTCTTGCTTTGGTACTGAAGCAGTTCTTGGCAGATCGTAGCCTTGACCAGTCCTATTCTGGAGGTTTAAGTT CCTATTGCTTGGTGTTGCTAATTATACGTTTTCTACAGCATGAGCATCATCTTGGCCGGCCTATCAATCAAAATGTCGGAAGCCTTCTAATGGATCTTCT TTACTTCTTCGGGAATGTGTTTGATCCTCGCCAAATGCGTATCTCAGTGCAGGGAAGTGGAGTATATATAAATAGGGAAAGAGGTTATAGTATTGATCCA ATACACATTGATGACCCTCTTTTCCCAACAAATAATGTGGGGAGAAATTGCTTTCGAATACATCAATGCATCAAGGCTTTTTCAGAAGCTTATTCTGTTT TGGAGAAGGAGCTGGCATGCCTTCCTGATGAAGGTGATACATGTTCAAGGCCAGCACACAGATTACTTCCAAAAATTATCCCAAGTATTGATATTACGGG GAGTTTAATTATCTGA
AA sequence Show only first row Show all	>Potri.014G066000.5 pacid=42763470 polypeptide=Potri.014G066000.5.p locus=Potri.014G066000 ID=Potri.014G066000.5.v4.1 annot-version=v4.1 MSVPNPNNNFSKHQNIPNALMTQNHLIGSLTSHISLYHSQSNPPSSPNPNPRSSILKWFKSLSVHQRQSHLTTVDFKFTQILLQMLAKLHSHGHCRFIIL PDLLSRDLPSLCFKKSRGLLSRVAESNESERLIFESTRLFSSREGEKVDDCRSGAEGLDSVTVSEDLIENVEKFVELMDDISNGGFLRGEESELGTDWVE LEWLKVRGYYCIEAFLANKLEVALRLAWLNCGNGKKRGVKLKEKLSAAGVAANVFWRRKGCVDWWRNLDAEVRRKVLNFALGKAAKSLTREILKDVSGVS GDELSLFRAGVQRPWRDLHAESRQRIFLKLPADAEFGLAPKPSFSGKDASFANIFNSLFVLQDIVSLVLPDQGSEYDTSHIFFSMLGSLGTLSDCILRKL RGLVMVISLDCTRLELLGEGTSNSSANKPSEKLGAGSRRKKGKTQNMKKLMNPTPVKSVDESSFKKLAEDIKCAPACIKKTELMESNEMPGIPHENENHR DISSPTVEMEHTQGLVHEKKRTAGRKNRKGRNKKKKSSFSNPVEVRKPEIAVSEAPSFSVCSSDEEAKLCRLSDNLTTQKASNDSLIDPSINEPTRKEID ALGIPEDHAVGCTEGISDAGLEHYRSSNGFVDNKSMPSRRETRCGVGQNIIYQVATTKELITVSSNEGTSFLNKKTEVKLDVGNKLVRTHEVKEVPTLNR GEESENFHESGSKGLSDCLSYEWPSLGPVYFPSINSHLPPATYRLHLDVGHNWHNHIHQPFLPTVHQARNSPIEGGSNRMLSQPLPMSLDWPPMVRSNCG LAPTMTCNYDSGFISRRQSTFQKSYTAKNMQYISKTFDDERRCSGDAIDFTEATSSQELMDEYENHWISEEEYEVHAVSGIDYNQHFGGGVMYWDPSDHP GTGFSRPPSLSSDDSGWPWHEAELNRAVDDMVAFSSSYSTTGLTSPTAASFCSAFDPLVPGHQALGYVMSGNEVPGKAMLSSTVTDAAAEEDVSGSLASL SSDVEGKAGDSLPYPILRPIIIPNMSRERSRSDFKRSLDHKSPCVPPTRREHPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKHRGFPTVRSGSSSPRQW GVRGWYHDGTNLEEACGRMDGAEVVWPSWRNKKLSTHPMVQPLPGALLQDRLIAMSHLARDQDHPDVLFPLQRAEIQNCPTRKASLCLVQSLLHDEIDSF CKQVAAANMARKPFINWAVKRVTRSLQVLWPRSRINIFGSSATGLALPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKND SLKTVENTAIPVIMLVVEVPTDLITSTASNVQSPKEEPIHLTVEHDIQVQSNMVVLEDSISPKCTQLNCDSKRDVKSIRLDISFKSPSHTGLQTTQLVKD LTEQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQNVGSLLMDLLYFFGNVFDPRQMRISVQGSGVYINRERGYSIDP IHIDDPLFPTNNVGRNCFRIHQCIKAFSEAYSVLEKELACLPDEGDTCSRPAHRLLPKIIPSIDITGSLII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	0	1
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	1.41	0.8885
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Potri.006G047700 [exp]	3.46	0.8575
AT5G11700			unknown protein		Potri.018G058300 [exp]	3.46	0.8340
AT3G04160			unknown protein		Potri.019G029400 [exp]	4.24	0.8560
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	7.34	0.7971
AT3G50370			unknown protein		Potri.007G043300 [exp]	10.00	0.8321
AT2G39260			binding;RNA binding (.1)		Potri.008G045400 [exp]	10.09	0.8161
AT3G22430			unknown protein		Potri.010G235700 [exp]	10.67	0.7961
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	11.61	0.7984
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.002G079100 [exp]	11.83	0.7684

Compare expression of checked genes

Potri.014G066000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.