Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60680 522 / 0 Plant protein of unknown function (DUF641) (.1) AT2G45260 270 / 9e-86 Plant protein of unknown function (DUF641) (.1) AT3G14870 194 / 5e-56 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 187 / 6e-54 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G29300 181 / 2e-51 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT4G34080 159 / 3e-45 Plant protein of unknown function (DUF641) (.1) AT5G58960 158 / 9e-43 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT4G33320 149 / 5e-41 Plant protein of unknown function (DUF641) (.1) AT2G30380 108 / 3e-25 Plant protein of unknown function (DUF641) (.1) AT4G36100 67 / 2e-12 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145000 [exp] 776 / 0 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.002G145900 [exp] 274 / 3e-87 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.011G108000 [exp] 220 / 4e-66 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.001G387700 [exp] 207 / 4e-61 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G071000 [exp] 186 / 2e-53 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 182 / 4e-53 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.013G155400 [exp] 184 / 2e-52 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 183 / 3e-52 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 176 / 2e-48 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009284 [exp] 558 / 0 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 275 / 2e-87 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 274 / 4e-87 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 199 / 3e-58 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10029259 [exp] 199 / 6e-58 AT1G29300 419 / 6e-144 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10007312 [exp] 193 / 1e-55 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 189 / 9e-55 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 185 / 2e-53 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 182 / 4e-52 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 181 / 2e-51 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [poplar] [flax] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Potri.014G066600.1 pacid=42764701 polypeptide=Potri.014G066600.1.p locus=Potri.014G066600 ID=Potri.014G066600.1.v4.1 annot-version=v4.1 ATGACTGAAACCATGGACACTACAACCTCAACAACATCAAAACAACCACAAATTTCTGAAATGTTTTCAAAATTTGCACTTGCTTTCAAGACCAAAACTT TCGAATTCTTCGCCGATGAAATTTCTGACGCCGACGAAGGCTTCTCCCTCCTTGATTCTGCCGAGGATTTTATCCCTGACCAGAAAGTCATAATCTTGAA ACCTGACCAACCCTTGAATCAAAATCAAGAATTTTTGTCACAGCAAGAGTTGACAGTGAAAAAGAGTGAGACCCAGATCAAGCATTTAAATACCCAGCTG GCTAATACTTTGATTTCTTCAGTTTTTGCTAAAGTTTCTTCATTTGAAGCTTCTTATTTGCAGTTACAAATTGCACACGTTCCTTTTAATGAAGAGAACA TTAAAGTAGCTGATAAGGCTTCAGTTTCAGTTCTTCAAAGGTTGTCTGATTTGAAGCAAGTTTATAGGGATATGTGTAAGAATCCTGATTCTGGTGATGA TTTGCCAATTGGATCTTGCTTGGAAGCTCAAGTAGAAGAGAATCAAAGCAAGTTGAGAATTATGGGGACTGTTTCTAATAGTTTGCAAGCAGAGATTGAT AAAAAAGATTGCGAGGTTTCGGCTTTGAAGAAGAAATTGATTGAGGTTCAAAAGTCCAATTCTTTATTGTCTAAGAGGTTGCTCAGTAGTTTGAATTTGA ATTCTGAGGTCTTGTTGACTGTTAAGGTTTTTGATTCTGTGCTAAATGATGCTTGTAGAACAATGCATAAGTTTACAAAGATATTGGTTGATTTGATGAG AAAAGCTGGGTGGGATTTGGATTTGGCGGCCAATTCTGTTCATTCTGATGTTGGTTATGTGAAAAGAGGGCATAATCGTTACGCATTTTTGTCTTATGTT TGTTTGGGGATGTTTAAAGGTTTTGATTTAGAAGGGTTTGGTTTGAAGAGTGACGGTGAGATTTTATGCAACGGGCATGACTCTGTTTCGGTTAAGAGTA ATAGCGCGTTGAAGCAATTACTTGAGCATGTATCTAGCAATCCTATGGAGTTGCTAAGTATGAATCCTACGTGTGAGTTTTTGAGATTTTGTGAAAAGAA GTATCAAGAGCTTATACACCCAACAATGGAATCCTCGATTTTCAGCAATTTCGATCAAAATGAATTTGTGTTGAATTCATGGAGGTCACTTGGGATGTTC TATGAGTCATTTGTTAACATGGCTAGTTCTGTATGGACACTTCATAAGCTGGCGTTTTCTTTTGATCCCGTGGTTGATATTTTTCAAGTGGAAAGAGGGG TTGATTTTTCAATGGTGTATATGGAAGATGTCACGGGGAGATGCACCATGCCAGGTAAAACCAGGCTGAAGGTTGGGTTCACAGTGGTTCCAGGATTTAA AATCGGAAGAACAGCTATCCAATCTCAGGTTTATTTATGTGGCTCAACATGTACAGAATAA
AA sequence Show only first row Show all	>Potri.014G066600.1 pacid=42764701 polypeptide=Potri.014G066600.1.p locus=Potri.014G066600 ID=Potri.014G066600.1.v4.1 annot-version=v4.1 MTETMDTTTSTTSKQPQISEMFSKFALAFKTKTFEFFADEISDADEGFSLLDSAEDFIPDQKVIILKPDQPLNQNQEFLSQQELTVKKSETQIKHLNTQL ANTLISSVFAKVSSFEASYLQLQIAHVPFNEENIKVADKASVSVLQRLSDLKQVYRDMCKNPDSGDDLPIGSCLEAQVEENQSKLRIMGTVSNSLQAEID KKDCEVSALKKKLIEVQKSNSLLSKRLLSSLNLNSEVLLTVKVFDSVLNDACRTMHKFTKILVDLMRKAGWDLDLAANSVHSDVGYVKRGHNRYAFLSYV CLGMFKGFDLEGFGLKSDGEILCNGHDSVSVKSNSALKQLLEHVSSNPMELLSMNPTCEFLRFCEKKYQELIHPTMESSIFSNFDQNEFVLNSWRSLGMF YESFVNMASSVWTLHKLAFSFDPVVDIFQVERGVDFSMVYMEDVTGRCTMPGKTRLKVGFTVVPGFKIGRTAIQSQVYLCGSTCTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60680			Plant protein of unknown funct...		Potri.014G066600 [exp]	0	1
AT5G42710			unknown protein		Potri.014G185300 [exp]	2.23	0.9105
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	3.46	0.8978
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	6.32	0.8872
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	6.55	0.8529
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	9.79	0.8898
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	10.58	0.8897	FAH1.3
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	12.84	0.8930
AT4G39070	CO		B-box zinc finger family prote...		Potri.004G161000 [exp]	13.41	0.8516
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	13.56	0.8953	SHMT3
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	13.85	0.8158

Compare expression of checked genes

Potri.014G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.