Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PE9.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 691 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 502 / 2e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 500 / 8e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 492 / 2e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 474 / 1e-164 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT3G49220 440 / 2e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 437 / 6e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 428 / 8e-145 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G59010 416 / 6e-141 PME61, PME35 pectin methylesterase 61 (.1) AT4G02320 410 / 8e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145500 [exp] 936 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 684 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 672 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 559 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 548 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 540 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 526 / 0 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 471 / 6e-162 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 436 / 4e-148 AT1G11580 560 / 0.0 methylesterase PCR A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 606 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 573 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 565 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 508 / 4e-177 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 476 / 4e-164 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 473 / 6e-163 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 462 / 4e-159 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 454 / 2e-155 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 454 / 3e-155 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 443 / 2e-149 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G067100.1 pacid=42763331 polypeptide=Potri.014G067100.1.p locus=Potri.014G067100 ID=Potri.014G067100.1.v4.1 annot-version=v4.1 ATGGCTATTCGAATTATGCTGACATTTCTATTCGTGTCTTTCCTTCTCTCCCCGACCATTTTGGGGTACAATCACGATGAGGTAAAGTCTTGGTGTAGCA AAACACCTAATCCACAACCATGTGAGTATTTTTTAAGCCATAACCCAAAAAATACCCCCATTCAACATGAGTCCGATTTTCTCAAAATTTCTATTGAACT AGCCTTGGACCGTGCCATGCATGGTAAAGTCAATACGTACTCCCTAGGCTCAAAATGTAGAAATGGGCTTGAAAAAGCTGCATGGGAAGATTGCCTTGAG CTCTATCAAGAGATCGTTCTTTGGCTCAACAAAACTACTGGCAGCAAGTGCACAAAATATGATGCACAAACATGGCTCAGCACGGCTCTAACCAACCTAG AAACGTGCAGAACCGGGTTCGCTGAATTCGGGATGACTGACTATATTTTGCCTATGATGAGTAATAATGTGTCCAAGTTAATCAGCAATACTTTGGCTAT TAACAAGGCACCATATAGCGAACCTAGTTTCAATGGTGGGTTCCCTTCATGGGTCAGACCTGGCGACCGGAAACTCTTGCAATCATCTTCACCAGCTTCT CAGGCAAACATTGTGGTGGCACAAGATGGGTCAGGGAACGTCAAGACCATTAAGGAGGCCATAGTTGCGGCATCGAAAAGATCAGGGTCAGGGAGGTATG TGATATATGTGAAGGCAGGGACATACAACGAAAACGTTGAGGTAGGACAAAAGGTGAAGAATGTTATGGTGGTAGGTGATGGTATAGGGAAGACAATCGT CACCGGTAGCAAAAGCGTCGGAGGAGGCACTACAACTTTCAAGTCAGCCACTTTTGCCGTGGTTGGAGATAATTTTATTGCTCGAGACATGACATTTAGA AACACAGCCGGCGCTAAAAATCATCAGGCAGTTGCCTTACGTTCCGGCTCCGATTTATCGGTGTTCTACAAGTGCAGCTTCGAAGGATACCAAGACACCC TCTATGTCCATTCTCAGAGACAGTTCTATAGAGAATGTAACATTTATGGCACTGTTGACTTCATATTCGGCAACGCTGCAGTTGTTTTTCAAAATTGTAA CATCTATGCACGAAACCCTCCTAACAAGACCAATACCATTACCGCTCAGGGGAGGACAGACCCTAACCAAAACACCGGAATTTCAATTCACAATTGTAAG GTAACTGCTGCTTCCGACTTAAAGTCAGTCCAAAGCTCCGTTAAAACATACCTCGGCAGGCCATGGCAAAAATACTCAAGGACTGTTTTCATGAAAACAG ACCTTGATAGCTTGATTAACTCAGCTGGTTGGATGCCATGGAGTGGTAATTTTGCTCTTGATACTTTATATTATGGAGAATACATGAATACTGGCCCTGG ATCATCTACTGCCAATAGAGTTAACTGGAAAGGCTACCACGTTATCACTAGTGCATCCGTGGCATCACAATTCACTGTGGCCAGCTTCATTTCGGGAAAT AATTGGTTGCCGGCCACCAACGTGCCATTCACCGCCGGCCTTTAA
AA sequence Show only first row Show all	>Potri.014G067100.1 pacid=42763331 polypeptide=Potri.014G067100.1.p locus=Potri.014G067100 ID=Potri.014G067100.1.v4.1 annot-version=v4.1 MAIRIMLTFLFVSFLLSPTILGYNHDEVKSWCSKTPNPQPCEYFLSHNPKNTPIQHESDFLKISIELALDRAMHGKVNTYSLGSKCRNGLEKAAWEDCLE LYQEIVLWLNKTTGSKCTKYDAQTWLSTALTNLETCRTGFAEFGMTDYILPMMSNNVSKLISNTLAINKAPYSEPSFNGGFPSWVRPGDRKLLQSSSPAS QANIVVAQDGSGNVKTIKEAIVAASKRSGSGRYVIYVKAGTYNENVEVGQKVKNVMVVGDGIGKTIVTGSKSVGGGTTTFKSATFAVVGDNFIARDMTFR NTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSQRQFYRECNIYGTVDFIFGNAAVVFQNCNIYARNPPNKTNTITAQGRTDPNQNTGISIHNCK VTAASDLKSVQSSVKTYLGRPWQKYSRTVFMKTDLDSLINSAGWMPWSGNFALDTLYYGEYMNTGPGSSTANRVNWKGYHVITSASVASQFTVASFISGN NWLPATNVPFTAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45220			Plant invertase/pectin methyle...		Potri.014G067100 [exp]	0	1	Pt-PE9.1
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	1.73	0.9693
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	6.00	0.9628
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.016G049200 [exp]	7.74	0.9582
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.005G188600 [exp]	9.53	0.9383
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447500 [exp]	9.79	0.9541
AT1G49000			unknown protein		Potri.010G130600 [exp]	12.24	0.9577
AT1G64160			Disease resistance-responsive ...		Potri.003G134400 [exp]	13.41	0.9532	Pt-DRR206.5
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071700 [exp]	14.96	0.9544	PtrPht1-2,PT2.9
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	15.49	0.9552
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447300 [exp]	15.49	0.9531

Compare expression of checked genes

Potri.014G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.