Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MAP1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45240 673 / 0 MAP1A methionine aminopeptidase 1A (.1) AT1G13270 262 / 1e-84 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2) AT4G37040 256 / 2e-82 MAP1D methionine aminopeptidase 1D (.1) AT3G25740 231 / 1e-72 MAP1C, MAP1B methionine aminopeptidase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G137400 [exp] 258 / 2e-83 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1) Potri.008G117200 [exp] 249 / 1e-79 AT1G13270 531 / 0.0 methionine aminopeptidase 1B (.1.2) Potri.006G102200 [exp] 41 / 0.001 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021657 [exp] 679 / 0 AT2G45240 696 / 0.0 methionine aminopeptidase 1A (.1) Lus10001650 [exp] 624 / 0 AT2G45240 637 / 0.0 methionine aminopeptidase 1A (.1) Lus10021701 [exp] 261 / 3e-84 AT1G13270 518 / 0.0 methionine aminopeptidase 1B (.1.2) Lus10011514 [exp] 258 / 3e-77 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 258 / 4e-77 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10035045 [exp] 222 / 2e-69 AT1G13270 466 / 3e-165 methionine aminopeptidase 1B (.1.2) Lus10003379 [exp] 46 / 5e-05 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 45 / 9e-05 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10012293 [exp] 43 / 0.0005 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24 CL0175 [poplar] [flax] TRASH PF15801 [poplar] [flax] zf-C6H2 zf-MYND-like zinc finger, mRNA-binding
Representative CDS sequence Show only first row Show all	>Potri.014G067300.1 pacid=42763880 polypeptide=Potri.014G067300.1.p locus=Potri.014G067300 ID=Potri.014G067300.1.v4.1 annot-version=v4.1 ATGGCCGGTGGCTCTGATGCGACTGATACTACTACTATTACCTTATCGTGCGCTCGATGTGGCAAACCTGCGCATCTCCAGTGTCCAAAATGCATTGAAT TAAAGCTTCCTCGTGAACCTGCCGCTTTCTGTTCGCAGGATTGTTTTAAGGCGTCGTGGAGCTCTCATAAATCAGTGCATACGAAGGCGAAGGAGGAAGA AAATAGGGATGGAAGTAGTGAAGGTTGGCTATATTGTGTGAGGAGAGGACAGGGTCGAACTCCGAAACTTCCACATTTTGATTGGACTGGGGGGTTAAGA CCGTATCCAATATCTCCCTACCGTGTTGTTCCTCCCCACATTGATCGACCTGATTGGGCAGTTGATGGAATCCCTAAGATTGAACCCAGCAGTGATTTGC AGCATGTTGTGGAGATCAAAACTCCTGAGCAAATTGAGAGAATGCGAGAAACTTGTCGAATAGCAAGGGAGGTTCTGGATGCTGCTGCACGGATCATTCG CCCTGGTGTGACAACAGATGAAATTGACAGAGTTGTTCATGAGGCAACTGTTGCAGCTGGTGGATATCCATCTCCTTTAAATTATCACTACTTCCCAAAG TCATGCTGCACGTCAATTAATGAAGTAATATGCCATGGAATTCCTGATGCCAGGAAATTAGAGGATGGTGATATAGTAAATGTTGACGTGACTGTGTGTT ATAAAGGTGTCCATGGTGATCTTAATGAAACATACTTTGTGGGAAATGTTGATGAAGCATCTCGACAATTAGTCCAATGTACTTATGAGTGCTTGGAGAA AGCAATATCGATTGTGAAACCTGGTGTACGATTTCGTGAAATTGGAGAAGTAATTAATCGTCATGCTACAATGTCGGGGTTGTCTGTGGTGAAATCATAC TGTGGTCATGGTATTGGAGAGCTTTTTCATTGTGCTCCAAATATTCCACATTATGGAAGAAATAAAGCAGTGGGTGTAATGAAGGCTGGACAGATCTTCA CTATTGAACCCATGATTAATGCAGGGGTTTGGCGTGATCGGATGTGGCCTGATGGATGGACTGCTGTCACCGCAGATGGCAAACGCAGTGCTCAGTTTGA GCACACGCTTCTGGTGACAGAAACTGGAGTAGAAGTTCTTACCACAAGGTTGCCTTCATCGCCGAAAGTGTACCCCTGGCTAAATGAATAG
AA sequence Show only first row Show all	>Potri.014G067300.1 pacid=42763880 polypeptide=Potri.014G067300.1.p locus=Potri.014G067300 ID=Potri.014G067300.1.v4.1 annot-version=v4.1 MAGGSDATDTTTITLSCARCGKPAHLQCPKCIELKLPREPAAFCSQDCFKASWSSHKSVHTKAKEEENRDGSSEGWLYCVRRGQGRTPKLPHFDWTGGLR PYPISPYRVVPPHIDRPDWAVDGIPKIEPSSDLQHVVEIKTPEQIERMRETCRIAREVLDAAARIIRPGVTTDEIDRVVHEATVAAGGYPSPLNYHYFPK SCCTSINEVICHGIPDARKLEDGDIVNVDVTVCYKGVHGDLNETYFVGNVDEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGLSVVKSY CGHGIGELFHCAPNIPHYGRNKAVGVMKAGQIFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTTRLPSSPKVYPWLNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Potri.014G067300 [exp]	0	1	MAP1.3
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Potri.001G234800 [exp]	1.00	0.7442
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.005G001200 [exp]	5.29	0.6801
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G130600 [exp]	9.48	0.6987
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Potri.016G119300 [exp]	10.39	0.6686
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	11.00	0.6546
AT2G37500			arginine biosynthesis protein ...		Potri.012G115900 [exp]	14.07	0.6659
AT1G63980			D111/G-patch domain-containing...		Potri.003G132600 [exp]	18.38	0.6270
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.001G116350 [exp]	18.89	0.6337
AT3G16640		TCTP	translationally controlled tum...		Potri.005G024800 [exp]	20.32	0.6679	Pt-TCTP.1
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.010G006800 [exp]	24.49	0.6663	RAP2.3,ERF34

Compare expression of checked genes

Potri.014G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.