Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAD51.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45280 398 / 2e-139 ATRAD51C RAS associated with diabetes protein 51C (.1.2) AT3G22880 103 / 3e-25 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT2G28560 99 / 2e-23 ATRAD51B, RAD51B DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) AT5G57450 93 / 1e-21 ATXRCC3, XRCC3 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) AT5G20850 92 / 3e-21 ATRAD51 RAS associated with diabetes protein 51 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081500 [exp] 100 / 5e-24 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.018G093100 [exp] 96 / 1e-22 AT5G57450 312 / 1e-106 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Potri.006G135200 [exp] 93 / 2e-21 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000790 [exp] 377 / 1e-132 AT2G45280 388 / 3e-136 RAS associated with diabetes protein 51C (.1.2) Lus10030284 [exp] 206 / 9e-67 AT2G45280 220 / 5e-72 RAS associated with diabetes protein 51C (.1.2) Lus10023341 [exp] 102 / 3e-24 AT2G28560 468 / 2e-163 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10038467 [exp] 99 / 2e-23 AT2G28560 430 / 2e-151 DNA repair (Rad51) family protein (.1), DNA repair (Rad51) family protein (.2), DNA repair (Rad51) family protein (.3), DNA repair (Rad51) family protein (.4) Lus10039383 [exp] 94 / 8e-22 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 91 / 1e-20 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10004464 [exp] 79 / 8e-17 AT5G57450 325 / 2e-111 ARABIDOPSIS THALIANA HOMOLOG OF X-RAY REPAIR CROSS COMPLEMENTING 3 \(XRCC3\), homolog of X-ray repair cross complementing 3 (XRCC3) (.1), homolog of X-ray repair cross complementing 3 (XRCC3) (.2) Lus10039928 [exp] 72 / 6e-14 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10027654 [exp] 72 / 7e-14 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13481 [poplar] [flax] AAA_25 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.014G068100.1 pacid=42764074 polypeptide=Potri.014G068100.1.p locus=Potri.014G068100 ID=Potri.014G068100.1.v4.1 annot-version=v4.1 ATGGATGGATTGGATGGAAGCAATGCTATTCTACAACAAGAACAACAACAACAAAGCCTCAATCCCAAAGACTGGATTGCAGTTGATCCACAAAATGCCT GGGATCTGCTTCATGAAGAGAGGTCTTTGATGACACGCCTTACCACATCTTGTGCGGATTTGGATGACATCCTAGGTGGAGGAATAAGTTGCAAACAAGT TACAGAAATTGGTGGAGTACCAGGCATTGGTAAAACACAGCTGGGGATCCAACTTGCTGTCAATGTTCAAATGCCATCTTTTTGTGGTGGCCTAGGAGGA AAGGCAATTTATATAGATACAGAAGGTAGTTTTATGGGAGAGCGTGCTCAAGAAATTGCTGAAGCATGTGTAGAGGACATTTCAGAATATAAAAGGTTCT TACACAAGGATTCGCAAGCCTGCCAAGGTGAAATCCAGGGCAAGGATGTCCTACAAAATATATACTTTTTCCGCATCTGCAGTTATACAGAGCAAATTGC CCTGATAAATTACTTGGAAGAGTTCATTTCAGATCACAAAGATGTTAAGATTGTTATCATTGATAGTGTTGCTTTCCACTTCCGTCAAGGTTTTGAAGAC CTGGCCCTCAGGACCCGAATACTTGGTGAAATGGCATTAAAGCTTGTGAAGCTTGCAAAAATGTGCAATTTAGCGGTGGTTTTATTGAATCAAGTGACAA CTAGGTACATGGAAGGTTCCTTCCAATTATCATTTTCATTGGGTGATAGGTGGTCACGTTGTTGCACTAATCGGATCATTTTGTACTGGAACAGAAATGA ACGATATGCATACATTGACAAGTCACCTTACCTTAGACCAGCAGCAGCACCTTATTCTGTGACTGGTAGAGGGATCCGAAATTCTGCTCCGCACTGTAAA CGTAGTAAGCTGGTTTAA
AA sequence Show only first row Show all	>Potri.014G068100.1 pacid=42764074 polypeptide=Potri.014G068100.1.p locus=Potri.014G068100 ID=Potri.014G068100.1.v4.1 annot-version=v4.1 MDGLDGSNAILQQEQQQQSLNPKDWIAVDPQNAWDLLHEERSLMTRLTTSCADLDDILGGGISCKQVTEIGGVPGIGKTQLGIQLAVNVQMPSFCGGLGG KAIYIDTEGSFMGERAQEIAEACVEDISEYKRFLHKDSQACQGEIQGKDVLQNIYFFRICSYTEQIALINYLEEFISDHKDVKIVIIDSVAFHFRQGFED LALRTRILGEMALKLVKLAKMCNLAVVLLNQVTTRYMEGSFQLSFSLGDRWSRCCTNRIILYWNRNERYAYIDKSPYLRPAAAPYSVTGRGIRNSAPHCK RSKLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Potri.014G068100 [exp]	0	1	Pt-RAD51.1
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.014G068000 [exp]	3.87	0.7381
					Potri.012G002350 [exp]	10.24	0.6868
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	11.22	0.7194
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024316 [exp]	14.66	0.7095
AT2G34930			disease resistance family prot...		Potri.001G043800 [exp]	16.73	0.7112
AT3G57770			Protein kinase superfamily pro...		Potri.005G106600 [exp]	18.49	0.6853
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	19.74	0.6985	RKF1.1
					Potri.002G100700 [exp]	24.26	0.6723
					Potri.006G031300 [exp]	24.81	0.6747
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G135500 [exp]	30.33	0.6658

Compare expression of checked genes

Potri.014G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.