Plant FIBer expression Database

Potri.014G068300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45300 642 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
AT1G48860 634 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G146400
[exp]
720 / 0 AT2G45300 790 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000788
[exp]
664 / 0 AT2G45300 816 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Lus10030282
[exp]
613 / 0 AT2G45300 757 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0290 EPT_RTPC PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Representative CDS sequence
>Potri.014G068300.1 pacid=42763535 polypeptide=Potri.014G068300.1.p locus=Potri.014G068300 ID=Potri.014G068300.1.v4.1 annot-version=v4.1
ATGCTTGGTGCACTCAGAACACTTGGACTATGTTTGGAAGAGAACACGGAACTCGAACAAGTGATCGTAGAAGGTTGTGGTGGTCAGTTTCCAGTGGGAA
AAGAAGCAAAGATTGATGTTGGACTTTTCCTTGGAAATGCTGGAACGGCAATGCGGCCATTTACAGCTGCAGTTACTGCTGCAGGTGGAAATTTGAGCTA
CATACTTGATGGGGTGTCACGAATGAGAGAGAGACCAATTGGTGATTTGGTTATTGGTCTTCAGCAGCTTGGTGCAGATGTTTCTTGTTCTCCTACAAAC
TGCCCCCCTGTTCGTGTAAATGCAAATGGAGGCCTTCCAGGGGGAAAGGTTAAACTCGCTGGATCGATAAGTAGTCAATACTTGACTGCTTTGCTCATGG
CAGCTCCTTTAGCCCTTGGAGATGTGGAAATTGAGATAATAGACAAGTTGATTTCTGTTCCTTATGTTGAGATGACTTTAAAGTTGATGGAGCGCTATGG
AGTCTTTATACAACATAGTGATAGCTGGGATCGTTTCTTCATTCGAGGAGGTCAAAAATACAAGTCTCCTGGAAATTCTTTTGTTGAGGGTGATGCTTCA
AGTGCCGGTTACTTCCTAGCTGGCGCAGCAATCACTGGTGGGACCATCACTGTTGAAGGTTGTGGAACAGACAGTTTGCAGGGAGATGTAAAATTTGCAG
AGGTTCTTGAGAAAATGGGAGCTAAAGTTACCTGGACCAAGAACAGTGTTACTGTCACTGGACTGCCACGAGATTCTTCTGGTTGGAAACACTTGCGTGC
TGTTGATGTAAACATGAACAAAATGCCAGATGTTGCTATGACTCTGGCTGTTGTTGCGCTTTTCACCAATGGCCCTACTGCCATAAGAGATGTGGCAAGT
TGGAGAGTGAAAGAAATGGAACGGATGATTGCTATTTGGAAGGAACTCAGGAAGTTGGGAGCAACAGTTGAAGAAGGACCAGATTACTGTGTGATTACCC
CCCCTGAGAAACTAAATGTAACAGAGATTGACACTTACGATGATCACAGGATGGCAATGGCATTCTCTCTTGCTGCTTGTGGAGAAGTCCCAGTCACCAT
CAAGGACCCTGGTTGCACTCGAAAAACTTTCCCAGACTACTTTGAAGTCCTTGAGAGGTACACGAAGCATTGA
AA sequence
>Potri.014G068300.1 pacid=42763535 polypeptide=Potri.014G068300.1.p locus=Potri.014G068300 ID=Potri.014G068300.1.v4.1 annot-version=v4.1
MLGALRTLGLCLEENTELEQVIVEGCGGQFPVGKEAKIDVGLFLGNAGTAMRPFTAAVTAAGGNLSYILDGVSRMRERPIGDLVIGLQQLGADVSCSPTN
CPPVRVNANGGLPGGKVKLAGSISSQYLTALLMAAPLALGDVEIEIIDKLISVPYVEMTLKLMERYGVFIQHSDSWDRFFIRGGQKYKSPGNSFVEGDAS
SAGYFLAGAAITGGTITVEGCGTDSLQGDVKFAEVLEKMGAKVTWTKNSVTVTGLPRDSSGWKHLRAVDVNMNKMPDVAMTLAVVALFTNGPTAIRDVAS
WRVKEMERMIAIWKELRKLGATVEEGPDYCVITPPEKLNVTEIDTYDDHRMAMAFSLAACGEVPVTIKDPGCTRKTFPDYFEVLERYTKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45300 RNA 3'-terminal phosphate cycl... Potri.014G068300
[exp]
0 1
AT3G01750 Ankyrin repeat family protein ... Potri.010G055700
[exp]
3.87 0.9285
AT4G38050 Xanthine/uracil permease famil... Potri.007G011400
[exp]
4.00 0.9145
AT5G20060 alpha/beta-Hydrolases superfam... Potri.006G251100
[exp]
7.81 0.8837
AT1G75840 ATROP4, ATGP3, ... RHO-LIKE GTP BINDING PROTEIN 4... Potri.019G092300
[exp]
9.16 0.9122
AT3G08500 MYB ATMYB83 myb domain protein 83 (.1) Potri.009G061500
[exp]
11.53 0.9058
AT5G47730 Sec14p-like phosphatidylinosit... Potri.006G004000
[exp]
12.84 0.9175 Pt-SSH1.2
AT2G38370 Plant protein of unknown funct... Potri.016G133300
[exp]
14.07 0.9070
Potri.003G104800
[exp]
17.02 0.9129
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.007G072750
[exp]
17.54 0.9128
AT3G54230 SUA suppressor of abi3-5 (.1.2) Potri.017G138401
[exp]
18.97 0.9132

Potri.014G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.