Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GAE2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 714 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 713 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 667 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 592 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 572 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G23820 568 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT3G14790 96 / 4e-21 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT4G23920 92 / 3e-20 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 90 / 2e-19 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G78570 90 / 4e-19 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146500 [exp] 785 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 585 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 573 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 563 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.018G100400 [exp] 555 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 548 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.012G128200 [exp] 545 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 229 / 2e-74 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 94 / 3e-21 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030281 [exp] 720 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 707 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 686 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 660 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 575 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 573 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10022552 [exp] 555 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10016640 [exp] 553 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 550 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10031127 [exp] 524 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G068400.1 pacid=42762439 polypeptide=Potri.014G068400.1.p locus=Potri.014G068400 ID=Potri.014G068400.1.v4.1 annot-version=v4.1 ATGTCTCATCTTGATCACACCCCATCAACACCAGGCAAATTCAAGATGGACAAATCACCATATTACTCAAGAACAAGGTGGCATTCCTCTGTAGCCAAGC TTACTATCTGGTCTTTTCTCTTCATTGCCGTAATCTTTGTCTTCTTTTATCGATCCCCGCCATCTTCATCAAACTCCGATCTATCACGCCGTTATCTTAC TTCTGCTACCTGGGGCGGAGCTGCTTGGGAAAAAAGGGTCCGGACCTCCGCCCGAATCCGGTCTCGAAATGGGTTCTCTGTTTTAGTGACAGGAGCAGCT GGTTTTGTTGGAACCCATGTTTCTTCTGCCCTTAAACGCCGTGGAGATGGTGTTTTGGGACTCGATAATTTCAATGATTACTATGATCCAACTTTGAAGA GAGCAAGACAAGCACTTCTTGAAAGAAGTGGTGTTTTTATTGTGGAAGGAGATATAAATGATGTTTCTTTGTTGAAGAAATTGTTTGAAGTGGTGCCTTT TACACATGTGATGCATTTGGCAGCTCAAGCTGGGGTTAGGTATGCAATGAAAAATCCTGCTTCTTATGTGCATAGTAATATTGCCGGTTTTGTTAGTTTG TTGGAAGTTTGTAAAGATGCAAATCCACAACCAGCTATTGTTTGGGCATCATCCAGTTCTGTTTATGGGCTTAATACTAAAGTGCCTTTCTCTGAGAAAG ATAGAACTGATCAACCTGCTAGTTTATATGCTGCTACTAAGAAAGCTGGTGAGGAAATTGCACACACTTATAATCATATTTACGGGCTTTCACTCACCGG GCTGCGATTTTTTACGGTTTATGGACCATGGGGGAGGCCGGATATGGCATATTTCTTTTTCACTAAGGATATTTTGAATGGGAAGACTATACCAATTTTT GAGGCTGCGAATCATGGGAATGTTGCTAGGGATTTTACCTACATTGATGATATTGTGAAGGGTTGTTTGGGTTCGTTGGATACGGCAGAGAAGAGTACCG GGAGCGGAGGGAAGAAGAAAGGGCCGGCACAATTGAGGGTTTTCAATTTGGGGAATACATCGCCTGTGCCGGTTACTGATCTTGTTAGTATTTTGGAAAG GCTTTTGAAGGTTAAGGCTAAAAGGAAAATTATGAAGTTGCCACGCAATGGGGATGTTCCATATACGCACGCGAATATTAGTTATGCTCAAAAGGAATTT GGATATAAGCCTACCACGGATCTGCAGACAGGGTTGAAGAAATTCGTGCGGTGGTACCTCAGTTACTATGGAAACAAGAAAGCTGTTGCGAGATGA
AA sequence Show only first row Show all	>Potri.014G068400.1 pacid=42762439 polypeptide=Potri.014G068400.1.p locus=Potri.014G068400 ID=Potri.014G068400.1.v4.1 annot-version=v4.1 MSHLDHTPSTPGKFKMDKSPYYSRTRWHSSVAKLTIWSFLFIAVIFVFFYRSPPSSSNSDLSRRYLTSATWGGAAWEKRVRTSARIRSRNGFSVLVTGAA GFVGTHVSSALKRRGDGVLGLDNFNDYYDPTLKRARQALLERSGVFIVEGDINDVSLLKKLFEVVPFTHVMHLAAQAGVRYAMKNPASYVHSNIAGFVSL LEVCKDANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILNGKTIPIF EAANHGNVARDFTYIDDIVKGCLGSLDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRKIMKLPRNGDVPYTHANISYAQKEF GYKPTTDLQTGLKKFVRWYLSYYGNKKAVAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.014G068400 [exp]	0	1	Pt-GAE2.1
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	3.00	0.9227	Pt-SAM1.1
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	7.87	0.9094	SHMT3
AT2G47360			unknown protein		Potri.014G119900 [exp]	11.22	0.9078
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	12.48	0.8969
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	12.68	0.8950
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.012G006400 [exp]	13.41	0.9003	OMT1.1
AT1G18290			unknown protein		Potri.015G036800 [exp]	13.56	0.8803
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	14.96	0.8948
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	17.23	0.8788
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.001G036900 [exp]	17.54	0.8897	Pt-4CL.3,Ptr4CL3

Compare expression of checked genes

Potri.014G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.