Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPS13.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60770 291 / 4e-103 Ribosomal protein S13/S15 (.1) AT4G00100 288 / 6e-102 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146800 [exp] 302 / 2e-107 AT3G60770 287 / 1e-101 Ribosomal protein S13/S15 (.1) Potri.012G128600 [exp] 296 / 6e-105 AT4G00100 288 / 6e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Potri.015G130000 [exp] 295 / 1e-104 AT4G00100 283 / 7e-100 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038908 [exp] 290 / 3e-102 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10027192 [exp] 290 / 3e-102 AT4G00100 289 / 4e-102 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031704 [exp] 268 / 6e-94 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1) Lus10031124 [exp] 268 / 6e-94 AT4G00100 267 / 9e-94 POINTED FIRST LEAF 2, ribosomal protein S13A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [poplar] [flax] S15_NS1 PF00312 [poplar] [flax] Ribosomal_S15 Ribosomal protein S15 CL0600 [poplar] [flax] PF08069 [poplar] [flax] Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G068600.1 pacid=42764064 polypeptide=Potri.014G068600.1.p locus=Potri.014G068600 ID=Potri.014G068600.1.v4.1 annot-version=v4.1 ATGGGTCGTATGCACAGTAAAGGCAAGGGTATCTCAGCATCTGCTTTGCCATACAAGAGGACCTCACCTAGTTGGCTCAAGATTTCTCCTCAAGATGTTG ACGACAATATCTGCAAGTTTGCAAAGAAAGGTTTGACACCATCTCAAATTGGTGTTATCCTTCGTGATTCTCATGGTATTGCTCAAGTGAAGACTGTTAC TGGCAACCAGATTTTGAGGATATTGAAGGCCCATGGGCTTGCACCTGAAATTCCTGAGGATCTGTACCACCTCATTAAGAAAGCAGTTGCTATTAGGAAG CATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAATTTAGGTTGATTTTGGTCGAGAGCAGGATCCACCGCCTTGCTCGCTATTACAAGAAGACCAAGA AGCTTCCACCAGTCTGGAAATATGAATCCACCACTGCCAGCACTCTCGTGGCATAG
AA sequence Show only first row Show all	>Potri.014G068600.1 pacid=42764064 polypeptide=Potri.014G068600.1.p locus=Potri.014G068600 ID=Potri.014G068600.1.v4.1 annot-version=v4.1 MGRMHSKGKGISASALPYKRTSPSWLKISPQDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKTVTGNQILRILKAHGLAPEIPEDLYHLIKKAVAIRK HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60770			Ribosomal protein S13/S15 (.1)		Potri.014G068600 [exp]	0	1	RPS13.1
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G051300 [exp]	2.00	0.9589
AT4G25740			RNA binding Plectin/S10 domain...		Potri.017G146700 [exp]	4.24	0.9556	RPS10.3
AT2G18110			Translation elongation factor...		Potri.015G094200 [exp]	7.93	0.9406	Pt-EEF1.1
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G211200 [exp]	8.60	0.9567
AT3G07910			unknown protein		Potri.003G197801 [exp]	9.94	0.9093
AT2G19730			Ribosomal L28e protein family ...		Potri.003G045500 [exp]	10.48	0.9544
AT1G57860			Translation protein SH3-like f...		Potri.016G061100 [exp]	10.95	0.9490
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.007G096300 [exp]	10.95	0.9444
AT5G35530			Ribosomal protein S3 family pr...		Potri.006G222100 [exp]	11.48	0.9552
AT5G02610			Ribosomal L29 family protein ...		Potri.008G048800 [exp]	11.48	0.9536	RPL35.1

Compare expression of checked genes

Potri.014G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.