Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45340 831 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 767 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 674 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 224 / 3e-64 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G07280 219 / 2e-60 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G23950 209 / 6e-59 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 207 / 3e-58 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 207 / 6e-58 NIK1 NSP-interacting kinase 1 (.1) AT5G01890 209 / 3e-57 Leucine-rich receptor-like protein kinase family protein (.1) AT1G67510 206 / 4e-57 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147000 [exp] 1151 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 851 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 815 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 752 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 738 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 242 / 1e-68 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 239 / 2e-67 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G137000 [exp] 231 / 7e-65 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G108200 [exp] 221 / 3e-63 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004032 [exp] 774 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 758 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 753 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 665 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 661 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 640 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031702 [exp] 206 / 1e-62 AT5G51560 258 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 214 / 1e-60 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 213 / 1e-59 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020936 [exp] 213 / 2e-59 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G068700.1 pacid=42763998 polypeptide=Potri.014G068700.1.p locus=Potri.014G068700 ID=Potri.014G068700.1.v4.1 annot-version=v4.1 ATGCATTCCCTCCTCTATCTCCTCCTTCTCTCTTTCACGCTCTCTCAAACCCTCTCCTCGCCAACGGAACTCGAACTCCTAATGGAAATCAAGGCTTCTT TAGACCCTCAAAACAGGTTATTGACATCATGGGAAACCAACAAAGACCCATGTAGTGGTTCTTTTGAAGGTGTGGCGTGCAATGAACTAGGCCATGTGGC TAACATTTCCCTTCAGGGAAAGGGTCTTCTAGGCCAAATACCAGCAGCTTTAGGCGGGCTAAAGAGTTTGACTGGTTTGTACTTGCATTTTAATGCATTG AATGGAGTGATACCAAAAGAGATTGCTGAGTTGAGTGAACTCAGTGATTTGTATCTTAATGTTAATAATCTGTCTGGAGAAATTCCACCCCATGTTGGTA ACATGTCTAATCTTCAAGTTTTGCAGCTTTGCTACAATAAGTTGACTGGGAGTATTCCAACACAATTGGGATCCCTGGAGAAGCTCAGTGTCCTTGCTCT GCAATATAATCAACTAACCGGTGCAATACCTGCCAGCCTGGGGGATTTGGAGTTGTTGTCAAGGTTGGATTTGAGCTTTAATGGCCTTTTTGGTCCCATA CCTGTAAAATTAGCTAAAGCTCCTCTGCTGCACTCTCTAGACATTCGTAACAATAGTCTCTCCGGGAATATACCTCCAGCTTTGAAGAGGCTGACTACTG GATTTCAATATGGCAACAACCCTGACTTGTGTGGAGTTGGGTTTTCTAACCTTGAAACATGTGCGACTTCTGATCCTAATAGACCTGAACCTTCCGAACC TCGTGTTGCCACGGAAAAGGACATCCCAGAGTCTGCAAACCCTTCTTATTGCAGCAAAAGTGACTGTTCAAATCTGTCCAAGACCCCAAGATATGGTATC ATATTCGGGGTGATCGGAGTTTTCATTGCTATGTCTGTCACTGGGCTTCTGATGTTCTCTTGGCACCGTCGCCGTAAACAGAAAATTGGAAGTGCCTTAG ATACTTTCGATGGGCGGCTTAGCACTGACCAGGCCAAGGAGGTTTCCAGGAGGAGTGCCTCCCCACTTATTAGCCTAGAATATCCCAATGGTTGGGATCC CTTGGCCATTGGTCGAAGCAAAAGTGGGTTTTCTCAAGAAGTTCTTGAGAGCTTCATGTTTAATTTAGAAGAGGTAGAGCGTGCAACTCAGTGCTTCTCG GAGATGAATTTGTTGGGGAAGAGTAATTTCTCAGCTATCTACAAAGGCATCCTGAGAGATGGGTCAGTTGTTGCTATAAAGTGCATCACCAAAACAAGTT GCAAGTCTGATGAAGCTGATTTTTTGAAGGGGTTGAAGATATTGACCTCATTGAAACATGAAAATCTGGTGAGATTGAGAGGTTTTTGCTGCTCAAAGGG AAGAGGGGAGTGTTTCCTCATCTATGATTTTGTCCCAAATGGAAACCTGGTGCAGTATCTTGATGTAAAGGATGGCAGTGGGAAGGTTCTTGAATGGTCG ACAAGAATTTCAATCATAAACGGCATTGCTAAAGGTATTGCACACTTACATGTAAGTAAAGGAAATAAACATGCTCTAGTTCATCAAAATATATCAGCTG AGAAAGTGTTCATCGATAGATGGTATAATCCCATGCTCTCGGATTCAGGGCTGCACAAACTCCTTGCAGACGACTTAGTCTTTTCCATGCTCAAAGCCAG TGCTGCCATGGGATATTTGGCTCCTGAATACACAACCACTGGTCGTTTCACTGAAAAGAGTGATGTTTATGCGTTTGGCATTATTGTACTTCAAATCCTC AGTGGAAAACGGAACATCACCCAATTGACTCACCATGCAGCTGAAGCATGCAAGTTTGAAGATTTTATTGATGCAAAACTCGAAGGAAACTTCTCAGAAT CAGAGGCAGCCAAGCTTGGAAGAATAGCTCTTTGTTGCACTAATGAATCTCCTAATCACAGGCCAACCATGGAAACTGTGATGCAAGAACTTGGTGAATC TATGGTCGCTGATTAG
AA sequence Show only first row Show all	>Potri.014G068700.1 pacid=42763998 polypeptide=Potri.014G068700.1.p locus=Potri.014G068700 ID=Potri.014G068700.1.v4.1 annot-version=v4.1 MHSLLYLLLLSFTLSQTLSSPTELELLMEIKASLDPQNRLLTSWETNKDPCSGSFEGVACNELGHVANISLQGKGLLGQIPAALGGLKSLTGLYLHFNAL NGVIPKEIAELSELSDLYLNVNNLSGEIPPHVGNMSNLQVLQLCYNKLTGSIPTQLGSLEKLSVLALQYNQLTGAIPASLGDLELLSRLDLSFNGLFGPI PVKLAKAPLLHSLDIRNNSLSGNIPPALKRLTTGFQYGNNPDLCGVGFSNLETCATSDPNRPEPSEPRVATEKDIPESANPSYCSKSDCSNLSKTPRYGI IFGVIGVFIAMSVTGLLMFSWHRRRKQKIGSALDTFDGRLSTDQAKEVSRRSASPLISLEYPNGWDPLAIGRSKSGFSQEVLESFMFNLEEVERATQCFS EMNLLGKSNFSAIYKGILRDGSVVAIKCITKTSCKSDEADFLKGLKILTSLKHENLVRLRGFCCSKGRGECFLIYDFVPNGNLVQYLDVKDGSGKVLEWS TRISIINGIAKGIAHLHVSKGNKHALVHQNISAEKVFIDRWYNPMLSDSGLHKLLADDLVFSMLKASAAMGYLAPEYTTTGRFTEKSDVYAFGIIVLQIL SGKRNITQLTHHAAEACKFEDFIDAKLEGNFSESEAAKLGRIALCCTNESPNHRPTMETVMQELGESMVAD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45340			Leucine-rich repeat protein ki...		Potri.014G068700 [exp]	0	1
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	1.00	0.9286
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	1.41	0.9258	ALDH1.2
AT1G33265			Transmembrane proteins 14C (.1...		Potri.011G147000 [exp]	2.00	0.8838
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.017G111700 [exp]	5.29	0.8596
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	5.47	0.8797
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	5.47	0.8803
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.002G225400 [exp]	7.00	0.8116
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.010G191500 [exp]	8.30	0.8334
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	9.05	0.8194
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.011G061300 [exp]	9.94	0.8632	Pt-RAB11.12

Compare expression of checked genes

Potri.014G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.