Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45350 735 / 0 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 383 / 1e-123 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 375 / 2e-120 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 370 / 7e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 366 / 1e-117 SLO1 SLOW GROWTH 1 (.1) AT4G02750 364 / 8e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 357 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 341 / 3e-106 unknown protein AT1G31430 331 / 2e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G44880 328 / 1e-104 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 411 / 2e-134 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 373 / 2e-119 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G217900 [exp] 370 / 2e-119 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.003G088600 [exp] 370 / 2e-119 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G104700 [exp] 369 / 1e-118 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 362 / 4e-118 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 369 / 5e-118 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 366 / 1e-117 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.005G011000 [exp] 363 / 2e-115 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015874 [exp] 709 / 0 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009290 [exp] 627 / 0 AT2G45350 605 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 389 / 1e-125 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 384 / 5e-124 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028907 [exp] 355 / 2e-114 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 353 / 2e-113 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019797 [exp] 349 / 7e-112 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 348 / 9e-112 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 348 / 6e-111 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 350 / 9e-111 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.014G068800.1 pacid=42764212 polypeptide=Potri.014G068800.1.p locus=Potri.014G068800 ID=Potri.014G068800.1.v4.1 annot-version=v4.1 ATGCTTCTTTCAGGAAATTTAAACCAGCAACCATGGAATTCGGCAATCCCAACTTTAGTTCTCCTCAAGAAATGCAAGAGATTAAGCGACATAAATCAAA TCCATGCAAGACTGCTAACAACTGGGTTTATCAAGAACACATTTCTAACCACCAAAATCATACTTTCATTCTCCACTTCACTGCACGCACCTCTCATTGA ATTCGCTCGCTTCATTTTCTTTAGACATCACGCTTTTGAATTCGATGAAAAAGAAGAAGAAGAAGAGAAAGACCCTTTTCTTTGGAATGCTATAATCAAA ACATACTCTCATGGGCATGACCCGAAAGAGGCTATGTGGCTTGTTTCTTTAATGCTTGAGAACGGGGCTTTTGCTGATAAGTTCACGTTGTCTCTGGTTT TGAAAGCGTGCTCTCGAGTGGGTCTGGTTAAGGAAGGAATGCAGATTCATGGGCTTTTGAAGAAATTGGAATTTGGCTCTGATTTGTTTTTGCAAAATTG TTTGATTTCTTTCTATGTAAAATGCGGGTGTCTTGTACGTGCCAGCCAAGTGTTTGATAGAATGCCAAAAAGGGACTCAGTTTCGTACAATTCGATGATT GATGGATATGTTAAAGGTGGGAGAATTGACTTGGCACGTGTGGTGTTTGATTGTATTCCATTGGAGGAAAGGAACTTGATTTCTTGGAATTCGTTGATAC GTGGATATGCGCAATCTGAAGATGGAATTTTGGTTGCTTGGCAGCTGTTTGCGAAAATGCCTGAGAGGGATTTGATTTCCTGGAATTCGATGATTGATGG TTGTGTGAAATGTGGGAGGATGGAAGATGCTCAGGGTTTGTTTGATAGGATGCCTAACCGGGATATTGTTAGTTGGGCTAATATGATTGATGGGTATGCC AAGAACGGAAGGGTTGATATTGCTAGATCTTTGTTTGATGAAATGCCCGAAAGAGATGTCGTCGCATACAATGCCATGATGGGTGGTTATGTACAAAATG GATATTGTATGGAAGCTTTGGGTATCTTTTATGGTATGCAAAGTGATGGTAATTTTTTGCTTGATAATGCTACACTGTTGATTGCTCTTTCAGCAATTGC TCAATTAGGACATATTGACAAAGGGGTAGCAATACATCGCTTTATAGAGGAAATTGGGTTTTCTTTGGATGGGAGACTTGGCGTTGCCCTCATTGACATG TATTCCAAGTGTGGCAGTATAGAGAACGCCATGATGGTATTTGAAAACATAAAAGAAAAAAGTGTTGATCACTGGAATGCTATTATTGGAGGGTTGGCCA TTCATGGCCTGGGTGAATTGGCTTTTGATTTTCTAATGGAGATGGAGAGGATGCGAGTTGAACCAGATGATATAACGTTCATCGGATTGTTAAATGCTTG TGGGCATGCTGGCTTGGTGAAAGAAGGTATGATGTGTTTTGAGCTTATGAGAAGAGTTCACAAGGTGGAGCCAAAACTGCAACACTATGGATGCATGGTT GACATTCTTGGCCGAGCAGGGCACATAGAAGAAGCCAAAAATTTTGTAGAGGAAATGCCTTTTGAGCCGAATGATGTGATTTGGAGGAGTTTGCTTAGTG CTTGTAAAACGCATGAAAGCTTTAATGTCGGACAGCCTGTAGCTGAGAATCTAATGAGGCTAGATTCTCCAAGCCCAAGTTCTTATGTGCTTGCATCAAA TATGTATGCTGGTCTTGGTAAATGGAACGATGTCCGCAAGGTTAGGGCAATGATGAAGCAAAAAAACCTGAAGAAAATTCCTGGCTGCAGTTGGATTGAA CTAGAGGGACATGTTTATGCATTTTTTGTGCAAGATAAATCCCATCCTCAATTTTCAGGGATCTATTCCATATTGGATAGTCTTTCAATGACCGATTCAG AGCATAGCTATTGTAAAAATGTCAAAATGTAA
AA sequence Show only first row Show all	>Potri.014G068800.1 pacid=42764212 polypeptide=Potri.014G068800.1.p locus=Potri.014G068800 ID=Potri.014G068800.1.v4.1 annot-version=v4.1 MLLSGNLNQQPWNSAIPTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFEFDEKEEEEEKDPFLWNAIIK TYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMI DGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYA KNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDM YSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMV DILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIE LEGHVYAFFVQDKSHPQFSGIYSILDSLSMTDSEHSYCKNVKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	0	1
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	4.00	0.9579
AT3G14330			Tetratricopeptide repeat (TPR)...		Potri.017G137200 [exp]	4.00	0.9458
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	4.35	0.9614
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	6.32	0.9560
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	6.92	0.9564
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	8.06	0.9367
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	8.36	0.9443
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	10.58	0.9467
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	12.84	0.9556
AT4G38490			unknown protein		Potri.004G177800 [exp]	12.96	0.9238

Compare expression of checked genes

Potri.014G068800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.