Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 148 / 3e-44 Protein of unknown function (DUF1442) (.1) AT2G45360 78 / 1e-17 Protein of unknown function (DUF1442) (.1) AT3G60780 60 / 9e-11 Protein of unknown function (DUF1442) (.1) AT1G12320 40 / 0.0004 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128900 [exp] 196 / 2e-63 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 183 / 5e-59 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 171 / 1e-53 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 87 / 8e-21 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 73 / 1e-15 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 73 / 1e-15 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 73 / 1e-15 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 69 / 3e-14 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031701 [exp] 168 / 3e-52 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 161 / 3e-49 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 139 / 1e-40 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 64 / 3e-12 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 56 / 3e-09 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 55 / 4e-09 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07279 [poplar] [flax] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Potri.014G069000.1 pacid=42763423 polypeptide=Potri.014G069000.1.p locus=Potri.014G069000 ID=Potri.014G069000.1.v4.1 annot-version=v4.1 ATGGCTAGTTGGTCAGCTGAAAATGCCACCAAAGCTTATTTCTATGCCTTGAAAATGGGTAAAAGAGACAAGGAGCTTGATGCATCTGAGTTTATATCAG CCCTTGCTGCAGGGAACAGTGCAAAACTCATGGTGATAGCGTCAGCTAGCATCGATGGATCCACCACGCTGTCACTTGTAGCAGCTGCACATCAAACAGG TGGCAATGTAGTCTGTATTTTACCTACAAAATCCAACCTTAGTGCATCAAAAAACGCTCTGGGACCTTATGCAGATTGTGTCAAGTTTGTCATGGGAGAT GCCAAGACCCTATTACCAAAGGACTACAAAGGTGCAGATTTTGTACTTGTGGATTGTGATCTTGATGATTGTAAGGAGGTTCTTAGAGCTTCACAGGAGT GTTCAAAACATGGAAAGGGGCTTGTAGTAGGGTATAACGCCTTTCATAAGGGATCGTCATGGTCTTGTGAGTTTAAGACTCGGTTTTTACCCATTGGGGA GGGGCTGCTTGTTACCGGAAAAGACTCAGCTGGTAAGGGTACTGGTGGCGGACATGGACATGGGCATGGAAAAAGAAGTAAATGGGTCACTAAGGTTGAC AAGTGCACCGGTGAAGAGCATGTTTATAGGGTCACTTCCCCACGGCAAGAGATTGAAGCTTGA
AA sequence Show only first row Show all	>Potri.014G069000.1 pacid=42763423 polypeptide=Potri.014G069000.1.p locus=Potri.014G069000 ID=Potri.014G069000.1.v4.1 annot-version=v4.1 MASWSAENATKAYFYALKMGKRDKELDASEFISALAAGNSAKLMVIASASIDGSTTLSLVAAAHQTGGNVVCILPTKSNLSASKNALGPYADCVKFVMGD AKTLLPKDYKGADFVLVDCDLDDCKEVLRASQECSKHGKGLVVGYNAFHKGSSWSCEFKTRFLPIGEGLLVTGKDSAGKGTGGGHGHGHGKRSKWVTKVD KCTGEEHVYRVTSPRQEIEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62280			Protein of unknown function (D...		Potri.014G069000 [exp]	0	1
AT4G03460			Ankyrin repeat family protein ...		Potri.019G106000 [exp]	4.89	0.7392
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.013G134900 [exp]	8.12	0.7572
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G081200 [exp]	13.19	0.8110
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	40.02	0.7333	Pt-PPD3.1
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.001G253800 [exp]	42.33	0.7203
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.005G048700 [exp]	50.67	0.6597
AT3G02720			Class I glutamine amidotransfe...		Potri.017G143940 [exp]	66.27	0.7075
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	84.29	0.6900
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G101401 [exp]	97.97	0.6742
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127400 [exp]	100.57	0.6891

Compare expression of checked genes

Potri.014G069000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.