Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SEC1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02010 944 / 0 SEC1A secretory 1A (.1.2) AT1G12360 859 / 0 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT4G12120 762 / 0 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 108 / 2e-24 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT2G17980 86 / 3e-17 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115800 [exp] 870 / 0 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 862 / 0 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.002G071600 [exp] 120 / 2e-28 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.005G188000 [exp] 116 / 5e-27 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.004G204400 [exp] 97 / 8e-21 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 91 / 6e-19 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.010G226600 [exp] 46 / 8e-05 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 43 / 0.0008 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015870 [exp] 895 / 0 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 853 / 0 AT1G02010 868 / 0.0 secretory 1A (.1.2) Lus10032196 [exp] 840 / 0 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 814 / 0 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10018921 [exp] 118 / 2e-27 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10028622 [exp] 117 / 2e-27 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10023936 [exp] 89 / 5e-18 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10014435 [exp] 88 / 7e-18 AT2G17980 989 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [poplar] [flax] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Potri.014G069300.1 pacid=42762639 polypeptide=Potri.014G069300.1.p locus=Potri.014G069300 ID=Potri.014G069300.1.v4.1 annot-version=v4.1 ATGTCAGTCTCCGATTCCGAATCATCATCTTCTTCTCACGGCGGAGAGTATAAATTCTTCCGTCAAATCACCCGTGATCGATTATTGTTTGAAATGCTTG GATCAACAAGAACAGGAGATTCAAAATCCACCTGGAAGGTGCTTATTATGGATAAAGTTACAGTGAAAGTCATGTCTCACTCTTGTAAAATGTCAGATAT TACAGACCAAGGAATTTCATTGGTGGAAGATCTTTTCAGGAGGAGGGAACCTATGACTTCTATGGATGCTATATATTTCATCCAGCCATCGAAAGAAAAT GTTGTCATGTTCTTGTCTGACATGTCTGGGAGGGAGCCTTTATACAAGAAAGCATATGTATTTTTTAGTTCATCTGTCCCAAAAGAATTGGTTAATCACA TCAAGTGTGATACAAGTGTGTTACCCCGAATAGGTGCTTTGAGAGAGATGAATTTGGAATACTTTCCCATTGATAATCAGGCTTTTATTACTGATCACGA AGGAGCACTGGGGGAACTCTATGGTAAAAATGTTGAGAACTCTCGCAGATTTGATGCATGTTTGAATACAATGGCAACTCGAATTGCAACAGTTTTTGCT TCATTGAACGAACTACCTTTTGTACGGTATCGTGCTGCCAAAGCTACAGATGATTCCACAGAAACATTTCGTGATTCAATTCCAGCAAAGCTTGCTGCTG GTGTTTTTAACAATCTTTTAAAATACAAGTGCATTCCCAACTTTCCACAAACCGAGACATGCGAGTTGCTTATCCTGGATAGATCTATTGACCAGATTGC TCCGGTCATACATGAATGGACTTATGATGCTATGTGCCACGATTTACTGGAAATGGATGGAAATAAATATGTTGTTGAGCTCCCTAGCAAAACAGGTGGC AGTCCTGAGAAAAAGGAGGTCCTTCTAGAAGACCAGGATCTAGTTTGGCGTGAGCTTCGCCATGCACATATAGCAGATGCTAGTGAACGCTTGCATGACA AGATGACCAACTTTGTGTCCAAGAACAAAGCTGCTCAAATGCAACAGAGTGCAAGAGATGGTAGTGAAATATCGACACGAGATTTGCAGAAAATTGTTCA AGCTTTGCCGAAATACAACGAACAAGTTGAGAAACTAACACTTCACATTGAGATTGCTGGAAAAATTAACAGCGTTATCAGAGAATTGGGACTTCGAGAT CTTGGGCAACTGGAGCAGGATCTTGTTTTTGGGGATGCAGGAGCTAAGGATGTTATCAGCTTTTTAAGGACGAAGCAGGATGCATCTCCTGAAAATAAGC TGCGTTTGTTGATGATCTATGCATGTGTGTATCCTGAGAAATTTGAGGGTGACAAAGCTTCAAAGTTAATGCAGCTGGCCAGGTTATCAAATGAGGATAT GAAGGTTGTTAATAATATGAAATTGCTTGGGGGTTCATCTGAGACCAAAAAGACATCAGGTGGTTTCTCTCTCAAGTTTGATAACCAGAAGACAAAGCAA GCAGCTAGAAAGGACCGAACTGATGAGGAAGAAACGTGGCAACTCTTCCGATTTTATCCTGTGCTGGAGGAGCTCCTTGAAAAACTCAGCAAACGTGAAT TGCCAAAGAATGAGTATTCGTGTATGAATGATCCAAGTTCAACTGACCAAGAGAGAACAAAGAGAGGATCAGTACGGAAGAGTCATGCTTCACCTGCTCC AGCTGTTCCAGAAAGAAAAGCTCCTGCACAATCAATGAGATCAAGAAGAACTGCAACTTGGGCACGAACTAGTAATTCTGATGATGGATATTCAAGTGAT TCAGTCTTGAAGAGCGCCGCAAGAGAGTTCAAGAAAATGGGACAGCGTATTTTTGTTTTCATCATTGGTGGTGCAACTCGTTCAGAGCTGCGAGCATGTC ACAAGCTTACAACAAAACTGGGGAGAGAAATTGTTCTAGGTTGTTCTAGTTTGGATGATCCTCCACAATATATCACGAAACTGAAGCTGCTGTCGGAAAC AGAAATCTCAACGGAAGTCCTTAGATTCTAA
AA sequence Show only first row Show all	>Potri.014G069300.1 pacid=42762639 polypeptide=Potri.014G069300.1.p locus=Potri.014G069300 ID=Potri.014G069300.1.v4.1 annot-version=v4.1 MSVSDSESSSSSHGGEYKFFRQITRDRLLFEMLGSTRTGDSKSTWKVLIMDKVTVKVMSHSCKMSDITDQGISLVEDLFRRREPMTSMDAIYFIQPSKEN VVMFLSDMSGREPLYKKAYVFFSSSVPKELVNHIKCDTSVLPRIGALREMNLEYFPIDNQAFITDHEGALGELYGKNVENSRRFDACLNTMATRIATVFA SLNELPFVRYRAAKATDDSTETFRDSIPAKLAAGVFNNLLKYKCIPNFPQTETCELLILDRSIDQIAPVIHEWTYDAMCHDLLEMDGNKYVVELPSKTGG SPEKKEVLLEDQDLVWRELRHAHIADASERLHDKMTNFVSKNKAAQMQQSARDGSEISTRDLQKIVQALPKYNEQVEKLTLHIEIAGKINSVIRELGLRD LGQLEQDLVFGDAGAKDVISFLRTKQDASPENKLRLLMIYACVYPEKFEGDKASKLMQLARLSNEDMKVVNNMKLLGGSSETKKTSGGFSLKFDNQKTKQ AARKDRTDEEETWQLFRFYPVLEELLEKLSKRELPKNEYSCMNDPSSTDQERTKRGSVRKSHASPAPAVPERKAPAQSMRSRRTATWARTSNSDDGYSSD SVLKSAAREFKKMGQRIFVFIIGGATRSELRACHKLTTKLGREIVLGCSSLDDPPQYITKLKLLSETEISTEVLRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02010		SEC1A	secretory 1A (.1.2)		Potri.014G069300 [exp]	0	1	Pt-SEC1.1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.011G046700 [exp]	2.82	0.7645	NAC002
AT1G62045			unknown protein		Potri.011G004400 [exp]	4.00	0.8071
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	12.16	0.6749
					Potri.018G104400 [exp]	16.43	0.7345
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.013G061100 [exp]	17.54	0.7045
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Potri.008G057900 [exp]	25.98	0.6052
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	47.49	0.6014
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	48.92	0.6181
AT5G42146			unknown protein		Potri.009G129301 [exp]	65.81	0.6955
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.004G057300 [exp]	75.52	0.6107

Compare expression of checked genes

Potri.014G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.