Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00090 592 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 57 / 1e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 56 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G32990 52 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 51 / 1e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G18140 49 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G15440 49 / 5e-06 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT1G24130 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 49 / 5e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49430 49 / 5e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148100 [exp] 742 / 0 AT4G00090 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 53 / 2e-07 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 53 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 52 / 7e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G173500 [exp] 52 / 8e-07 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.003G060500 [exp] 51 / 1e-06 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.016G052800 [exp] 50 / 1e-06 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G241800 [exp] 50 / 2e-06 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.018G020200 [exp] 50 / 2e-06 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004027 [exp] 591 / 0 AT4G00090 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030275 [exp] 587 / 0 AT4G00090 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 56 / 3e-08 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10034114 [exp] 56 / 4e-08 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10012475 [exp] 51 / 1e-06 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021365 [exp] 50 / 1e-06 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036625 [exp] 51 / 2e-06 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10041007 [exp] 50 / 2e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006916 [exp] 50 / 2e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 50 / 2e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.014G069400.1 pacid=42762454 polypeptide=Potri.014G069400.1.p locus=Potri.014G069400 ID=Potri.014G069400.1.v4.1 annot-version=v4.1 ATGGATCAGGTCCTCCCGATTGCTCTTATCTCGGTCCTTCTCGGTACTGCAATTGCTCTTATCTTCTTTAAAAACTACTTTCTCAAAAGAAAATCCGAAA TTGGATCCATCGCGAAACCCGAAATCCATCCGGATCCTCTTAGAAAACCTCCTAAACCTACTCATCAATCCAAAAAGTCTCACTCTCATGCCTCTTCTGA TAAGGATCATAACAAGAAACATCATCCGTTGGATTTGAATACTTTGAAAGGTCACGGTGATTCAGTTACGGGCCTGTGTTTCTCTTATGATGGACGCAGT TTGGCTACCGCTTGTGCAGATGGAGTGGTGAGGGTGTTCAAGTTAGATGATGCTTCGAGTAAAAGTTTCAAGTTTTTGAGAATTAATGTGCCGGCTGGAG GTCACCCGGTTGCAGTGGCGTTTTCTGATGACGCGTCATCTGTCGTGTTGGCGTCGCACACACTGTCTGGTTCGTCCTTATATATGTGGGGAGAGGAAAA GGTCAAAGATTCTAATGACTCTAAGCAGCAACCAAAGCTTCCGCTCCCAGAAATCAAATGGGAACATCACAAAATTCATGAGAAAAAGGTGGTTTTGACC CTGGTTGGAACTGCTTCAACTTATGGCAATGGCGACGGAAGTACAATTGTGGCCTCTTGTTCGGAAGGTACTGATATCAAAATTTGGCATGGAAAGACAG GAAAGAATTTGGGGACTGTCGATACAAATCAATTGAAAAACACAATGGCTGCTATATCACCAAATGGACGTTTCATTGCTGCTGCAGCTTTTACTGCAGA TGTGAAGGTATGGGAGATTGTGTATTCAAAGGATGGTTCTGTCAAGGAGGTTCCAAAAGTCATGCAACTTAAAGGGCACAGGAGTGCAGTAACATGGTTA TGCTTCACTCCAGACTCGGAGCAAATCATCACAGCCTCCAAAGATGGTTCAATAAGAATATGGAACATCAATGTTCGTTATCATCTTGATGAGGATCCAA AGACTTTAAAGGTGTTTCCGATTCCACTTCATGATTCAAATGGTGGAACTTTGCATTATGATCGTCTCAGTTTATCCCCTGATGGAAGGATATTGGTTGC AACCCATGGTTCGATGCTGCAGTGGTTATGTGTTGAAACTGGAAAGGTTTTGGACACAGCTGACAGAGCCCATGATGGTGACATCACATGGATTGCTTGG GCGCCGAAGCCTATTCCAACAGGTGATGGACAAACGTCCATTTTGGCCACAGCCAGTGTTGACAAGAAAGTGAAGTTATGGGCAGCTCCACCACTCCGAT CAGCATAA
AA sequence Show only first row Show all	>Potri.014G069400.1 pacid=42762454 polypeptide=Potri.014G069400.1.p locus=Potri.014G069400 ID=Potri.014G069400.1.v4.1 annot-version=v4.1 MDQVLPIALISVLLGTAIALIFFKNYFLKRKSEIGSIAKPEIHPDPLRKPPKPTHQSKKSHSHASSDKDHNKKHHPLDLNTLKGHGDSVTGLCFSYDGRS LATACADGVVRVFKLDDASSKSFKFLRINVPAGGHPVAVAFSDDASSVVLASHTLSGSSLYMWGEEKVKDSNDSKQQPKLPLPEIKWEHHKIHEKKVVLT LVGTASTYGNGDGSTIVASCSEGTDIKIWHGKTGKNLGTVDTNQLKNTMAAISPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKVMQLKGHRSAVTWL CFTPDSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVFPIPLHDSNGGTLHYDRLSLSPDGRILVATHGSMLQWLCVETGKVLDTADRAHDGDITWIAW APKPIPTGDGQTSILATASVDKKVKLWAAPPLRSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00090			Transducin/WD40 repeat-like su...		Potri.014G069400 [exp]	0	1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.013G023100 [exp]	1.73	0.7904
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	1.73	0.8264
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	2.23	0.7892
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	3.74	0.8145
AT4G16180			unknown protein		Potri.010G146800 [exp]	12.48	0.7567
AT2G32320			tRNAHis guanylyltransferase (....		Potri.002G233300 [exp]	15.68	0.7189
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	20.09	0.7895	CYP89A27P
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	22.91	0.7350
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	23.66	0.7475
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.008G113900 [exp]	24.49	0.7645

Compare expression of checked genes

Potri.014G069400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.