Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 403 / 2e-142 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 401 / 1e-141 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 363 / 6e-127 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT2G29390 203 / 3e-64 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 203 / 3e-64 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT1G14290 49 / 1e-06 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 48 / 3e-06 SBH1 sphingoid base hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116500 [exp] 430 / 7e-153 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 423 / 4e-150 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.009G037400 [exp] 197 / 7e-62 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G245300 [exp] 194 / 1e-60 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 400 / 3e-141 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 370 / 1e-129 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 364 / 2e-127 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 316 / 4e-108 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 306 / 1e-104 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10028908 [exp] 258 / 2e-85 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10016492 [exp] 206 / 4e-65 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 205 / 1e-64 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10001556 [exp] 195 / 8e-61 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004988 [exp] 110 / 2e-29 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G069500.1 pacid=42762396 polypeptide=Potri.014G069500.1.p locus=Potri.014G069500 ID=Potri.014G069500.1.v4.1 annot-version=v4.1 ATGCTGCCTTACCAGAACTTGCACCAAGCAGAGGCAGCTCTTGGCAGAGAGCTAACTATTGCAGAGAAACTATGGCTCAATTACTCAGCCAATAAACCTG ATTACCTTCTTCATTATCATAACATTCTCTTCCTGATCCTCTTTTACTCTATAGTTCCTCTCCCATACATGTTTATTGAACTAAGCCGGTCCAAGAGGAT AGACAAGCACAAGATTCAATCCAAAATCAAGAACTCATTCCAAGACATGCTGAAATGCTACAAGGATGTTGTGCAAACTTTTATCGTTGTTGTTGGTCCT CTTCAAGTCTCTTCTTACCCTTTCATCAAGCTGATTGGCATCCGAACTAGTCTGTCATTACCTTCAGGAGGGGAAATGTTCTGGCAGTTATTAGTGTATT TTCTGATAGAGGATTATACCGGTTATTGGGTTCATAGGTTGCTTCATTCCAACGGGGGCTATGAGAAAATCCACCATGTTCACCATGAATATAGTGCTCC AATGGGGTTTGCAGGGCCTTATGCACACTGGTCTGAAATTTTGATTCTTGGCATGCCTGCATTTCTTGGTCCTGCAGTAGTTCCTGGACACATTACTACT TATTGGCTATGGTTCGTTTTAAGACAAATAGAAGCTATAGAGACTCACAGCGGATATGATTTTTCATGGAGTCCAACAAGATTTATACCATTCTACGGAG GTGCAAGGTACCATGATTATCATCATTACGTGGGTCGCCATAGCCAAAGTAATTTCGCTTCCGTTTTCACATACTGTGATTACCTTTATGGAACAGACAA GGGCTATCGGTACCACAAGTCCATCCACCGAAAGATGGAGGAGACAGTGGAGAGGAATGGCGGACATCGTGAGGGCAGCTATAATTCCATGCCTGCCCAA GATTTCAAATCCGAATAA
AA sequence Show only first row Show all	>Potri.014G069500.1 pacid=42762396 polypeptide=Potri.014G069500.1.p locus=Potri.014G069500 ID=Potri.014G069500.1.v4.1 annot-version=v4.1 MLPYQNLHQAEAALGRELTIAEKLWLNYSANKPDYLLHYHNILFLILFYSIVPLPYMFIELSRSKRIDKHKIQSKIKNSFQDMLKCYKDVVQTFIVVVGP LQVSSYPFIKLIGIRTSLSLPSGGEMFWQLLVYFLIEDYTGYWVHRLLHSNGGYEKIHHVHHEYSAPMGFAGPYAHWSEILILGMPAFLGPAVVPGHITT YWLWFVLRQIEAIETHSGYDFSWSPTRFIPFYGGARYHDYHHYVGRHSQSNFASVFTYCDYLYGTDKGYRYHKSIHRKMEETVERNGGHREGSYNSMPAQ DFKSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.014G069500 [exp]	0	1
AT3G04200			RmlC-like cupins superfamily p...		Potri.010G240500 [exp]	1.73	0.9376
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.008G137600 [exp]	9.89	0.9362
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Potri.019G061900 [exp]	23.87	0.9096	8,Pt-PT2.6
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.001G193200 [exp]	29.59	0.9055
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.010G240600 [exp]	31.93	0.8635	Pt-GER2.19
					Potri.019G017302 [exp]	34.08	0.8645
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143400 [exp]	35.49	0.9016
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G198100 [exp]	39.79	0.9002
AT1G54630		ACP3	acyl carrier protein 3 (.1.2)		Potri.006G217800 [exp]	43.31	0.8992
					Potri.007G109600 [exp]	43.72	0.8963

Compare expression of checked genes

Potri.014G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.