Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02390 204 / 1e-66 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) AT2G02380 199 / 2e-64 ATGSTZ2 glutathione S-transferase (class zeta) 2 (.1) AT2G29480 50 / 1e-07 GST20, ATGSTU2 GLUTATHIONE S-TRANSFERASE 20, glutathione S-transferase tau 2 (.1) AT1G49860 48 / 1e-06 ATGSTF14 glutathione S-transferase (class phi) 14 (.1) AT2G29460 46 / 6e-06 GST22, ATGSTU4 GLUTATHIONE S-TRANSFERASE 22, glutathione S-transferase tau 4 (.1) AT2G29490 43 / 4e-05 GST19, ATGSTU1 GLUTATHIONE S-TRANSFERASE 19, glutathione S-transferase TAU 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G232600 [exp] 235 / 8e-79 AT2G02390 306 / 2e-106 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Potri.008G174900 [exp] 45 / 1e-05 AT2G29420 184 / 1e-58 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061301 [exp] 44 / 2e-05 AT2G29420 202 / 9e-66 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.002G254000 [exp] 44 / 2e-05 AT2G29420 167 / 1e-51 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061800 [exp] 44 / 3e-05 AT2G29420 187 / 1e-59 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061200 [exp] 43 / 6e-05 AT3G09270 202 / 8e-66 glutathione S-transferase TAU 8 (.1) Potri.008G175100 [exp] 41 / 0.0003 AT2G29420 169 / 1e-52 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 40 / 0.0004 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.006G024200 [exp] 40 / 0.0005 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030274 [exp] 272 / 3e-93 AT2G02390 249 / 6e-84 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 203 / 5e-66 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005367 [exp] 200 / 5e-65 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10004026 [exp] 135 / 2e-40 AT2G02390 143 / 6e-44 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10005368 [exp] 50 / 2e-08 AT2G02390 72 / 8e-18 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10035241 [exp] 42 / 0.0002 AT2G29420 188 / 5e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Lus10021102 [exp] 41 / 0.0002 AT3G09270 245 / 2e-82 glutathione S-transferase TAU 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13417 [poplar] [flax] GST_N_3 Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G069600.1 pacid=42763157 polypeptide=Potri.014G069600.1.p locus=Potri.014G069600 ID=Potri.014G069600.1.v4.1 annot-version=v4.1 ATGAATTCATCACCAAAGCTCGTCCTGTATAATTTCTCGCACAGCTCCTGTTCATGGCGGGTCCGCTTTGCTTTAAACCTTAAAGGACTTGATTATGAGT ATAAAGCAGTCAACCTTGCAAAAGGAGAGCAGTTTCGTACAGAGTTTGAACAATTGAATCCTCTCCGTTATGTTCCAGTCTTGGTTGATGGTGATGTGGT AGTCTCGGACTCCTTAGCAATCTTGCTGTATTTGGAAGAAAAGTATCCTCAGAGAGCGTTGCTGCCAGATGATCCTCGGCGAAAAGCTCTAAATCTCCAA GTTGCCAGTATCGTCTGCTCTAGCATACAACCTCTTCATATGTTGGCTTTGGTGAAACGCATTGAAGAAAAAGTTGGTCCGGAAGAGGGATTATTATGGG CACAATCTAGTATTGAAAAAGGTTTTTTTGCACTTGAGCAGTTGGTAAAAGACTTTGCAACCAGATTTGCCACTGGAGAAGCATTATACATGGCTGATGT GTTTTTGGCCCCACAGATTGCTACAGTTGTTATGAGGTTCAACATTGATATGTCCAACTTCCCTATTTTAAGTAGGGTATATGAATCATACAAGACCGTA CCGGAGTTCCGAGCTTCATCCCCGGAAGCACAACCAGATGCAGGGAGTTAA
AA sequence Show only first row Show all	>Potri.014G069600.1 pacid=42763157 polypeptide=Potri.014G069600.1.p locus=Potri.014G069600 ID=Potri.014G069600.1.v4.1 annot-version=v4.1 MNSSPKLVLYNFSHSSCSWRVRFALNLKGLDYEYKAVNLAKGEQFRTEFEQLNPLRYVPVLVDGDVVVSDSLAILLYLEEKYPQRALLPDDPRRKALNLQ VASIVCSSIQPLHMLALVKRIEEKVGPEEGLLWAQSSIEKGFFALEQLVKDFATRFATGEALYMADVFLAPQIATVVMRFNIDMSNFPILSRVYESYKTV PEFRASSPEAQPDAGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.014G069600 [exp]	0	1
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	2.44	0.7659
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Potri.011G099701 [exp]	3.74	0.7533
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	7.54	0.7335
AT4G32560			paramyosin-related (.1.2.3)		Potri.006G247900 [exp]	7.93	0.6753
AT1G09740			Adenine nucleotide alpha hydro...		Potri.002G104700 [exp]	8.83	0.6219
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	9.16	0.6763
AT5G61340			unknown protein		Potri.004G102800 [exp]	10.81	0.6673
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	13.96	0.6594	RD19.3
AT4G31130			Protein of unknown function (D...		Potri.006G280900 [exp]	16.43	0.6528
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	20.00	0.5875

Compare expression of checked genes

Potri.014G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.